Browse Element(s) Details


Os.53065.1.S1_at

Description gb:AK070673.1
DB_XREF= gi:32980697
TID=Os.53065.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059G01, full insert sequence.
FL= gb:AK070673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4620011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53065.1.S1_at--363--211Chr01:26610216..26610240 (25 bp)
ATTTGCGCTTTGGACTTGCTACAGA
LOC_Os01g46200
Os.53065.1.S1_at--473--1191Chr01:26610166..26610190 (25 bp)
AGTAGCTCTTATAGTGTGTGGCCTA
LOC_Os01g46200
Os.53065.1.S1_at--305--10791Chr01:26610132..26610156 (25 bp)
TTGTATACAACCTGCCACCATGGAA
LOC_Os01g46200
Os.53065.1.S1_at--1014--8131Chr01:26610098..26610122 (25 bp)
GGAACCCTTCATATTAATGCCCTTG
LOC_Os01g46200
Os.53065.1.S1_at--916--3011Chr01:26610083..26610107 (25 bp)
AATGCCCTTGCTGATTCCAGGGAAG
LOC_Os01g46200
Os.53065.1.S1_at--895--8871Chr01:26610038..26610062 (25 bp)
TGATGTGTACATGAGGCCCTTGATT
LOC_Os01g46200
Os.53065.1.S1_at--1124--3131Chr01:26610009..26610033 (25 bp)
AATTGAATCTACTCTTTAACACTGG
LOC_Os01g46200
Os.53065.1.S1_at--755--10431Chr01:26609919..26609943 (25 bp)
TTAGTGACCTTCGTGCATTAGATTC
LOC_Os01g46200
Os.53065.1.S1_at--1061--2931Chr01:26609866..26609890 (25 bp)
AAGGCTTGCCCGATATGTTTAGATT
LOC_Os01g46200
Os.53065.1.S1_at--651--1251Chr01:26609846..26609870 (25 bp)
AGATTGGACTGATTCGTGTTCGCTA
LOC_Os01g46200
Os.53065.1.S1_at--191--6231Chr01:26609723..26609747 (25 bp)
GAGGCCAAGACAGCTATCAGGAGAT
LOC_Os01g46200
Target Sequence 
ATTTGCGCTTTGGACTTGCTACAGATGGGTTCAACCCATTTGGAACTTTGAGTAGCTCTTATAGTGTGTGGCCTATTATA
TTAGTTGTATACAACCTGCCACCATGGAAGTGCATGAAGGAACCCTTCATATTAATGCCCTTGCTGATTCCAGGGAAGAA
AGCACCTGGAAGGGATATTGATGTGTACATGAGGCCCTTGATTGAAGAATTGAATCTACTCTTTAACACTGGAGTCAGTA
CATATGATGCCTTTGTAGGAGATACTTTCAATCTACGAGCAGTAGTGCTAGGCACTATTAGTGACCTTCGTGCATTAGAT
TCACTATCTGGGTATGTGGCAATGGGCTATAAGGCTTGCCCGATATGTTTAGATTGGACTGATTCGTGTTCGCTAAGAAG
CAAGATTGGTTTTTTGGGTCATAGAAGATACTTGCCTATTCAGTATAGATGGCGAAGAAGTAAGAACTTTAATGGCAAGA
ATGAAACATCATTGAGGCCAAGACAGCTATCAGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis