Browse Element(s) Details


Os.21537.1.S1_x_at

Description gb:BE228987
DB_XREF= gi:8955181
DB_XREF=98AS3444
CLONE=98AS3444
TID=Os.21537.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21537 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45681 (A.thaliana) T45681 ketol-acid reductoisomerase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g463803/11Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21537.1.S1_x_at--331--10451Chr01:26722629..26722651 (23 bp)
TTAGTGCCATTGAAGTCTGTGCTCT
LOC_Os01g46380
Os.21537.1.S1_x_at--749--5331NONE
GAAGTCTGTGCTCTGTTGAAGCCCA
NONE
Os.21537.1.S1_x_at--905--8791NONE
TGTTGAAGCCCACCGTTGACATTTC
NONE
Os.21537.1.S1_x_at--128--5591NONE
GACAATCTTCGTGAATTTTTTGCCA
NONE
Os.21537.1.S1_x_at--400--3071NONE
AATCTTCGTGAATTTTTTGCCAACT
NONE
Os.21537.1.S1_x_at--386--3651NONE
CTTCGTGAATTTTTTGCCAACTCCA
NONE
Os.21537.1.S1_x_at--512--3671Chr01:26722828..26722852 (25 bp)
CTTTTGGAGTGTAGGATTGTCGTTT
LOC_Os01g46380
Os.21537.1.S1_x_at--525--6931Chr01:26722838..26722862 (25 bp)
GTAGGATTGTCGTTTGGTTGTCACT
LOC_Os01g46380
Os.21537.1.S1_x_at--215--6871Chr01:26722849..26723169 (25 bp)
GTTTGGTTGTCACTGGACTAATGCT
NONE
Os.21537.1.S1_x_at--627--10831NONE
TTGGTTGTCACTGGACTAATGCTGG
NONE
Os.21537.1.S1_x_at--797--7891NONE
GGTTGTCACTGGACTAATGCTGGTG
NONE
Target Sequence 
TTAGTGCCATTGAAGTCTGTGCTCTGTTGAAGCCCACCGTTGACATTTCNGTGCCTGCTGATGCANACTTTGTGCGTCCN
NANCTGCGACAATCTTCGTGAATTTTTTGCCAACTCCANGGGCACCTCANNAACTATGTCCGTATCTGACNGTTTCAACT
CTCAAAGCTATGTNTCACTATTTNAGAACCTAAATNTNAACTTTTGGAGTGTAGGATTGTCGTTTGGTTGTCACTGGACT
AATGCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21537.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis