Browse Element(s) Details


Os.7172.1.S1_at

Description gb:AK119967.1
DB_XREF= gi:37989590
TID=Os.7172.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D11, full insert sequence.
FL= gb:AK119967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g463701/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7172.1.S1_at--114--10751Chr09:20485852..20485876 (25 bp)
TTGACGACGACGGTAGCACCTGGAC
NONE
Os.7172.1.S1_at--323--5791Chr09:20485854..20485878 (25 bp)
GACGACGACGGTAGCACCTGGACGC
NONE
Os.7172.1.S1_at--592--5771Chr09:20485857..20485881 (25 bp)
GACGACGGTAGCACCTGGACGCCGC
NONE
Os.7172.1.S1_at--173--5812Chr09:20485874..20485898 (25 bp)
GACGCCGCGGAGGAAGTCGTGCAGC
NONE
Os.7172.1.S1_at--852--8692Chr09:20485938..20485962 (25 bp)
TGTGCGTCGGCGAGCGCGTAGCGGT
NONE
Os.7172.1.S1_at--1001--2771Chr09:20486184..20486208 (25 bp)
AAGAGAACATGTTGACGTGGCGCCT
NONE
Os.7172.1.S1_at--466--8451NONE
TGGCGCCTAACATGGGGGTCCCACG
NONE
Os.7172.1.S1_at--792--2452Chr09:20486248..20486272 (25 bp)
AACACGTCAGATAAAACCGCGACCA
NONE
Os.7172.1.S1_at--131--3351Chr09:20486250..20486274 (25 bp)
CACGTCAGATAAAACCGCGACCAAA
NONE
Os.7172.1.S1_at--401--8772Chr09:20486304..20486328 (25 bp)
TGTTAGTTGAGGGACATCCGGTATC
NONE
Os.7172.1.S1_at--88--10431Chr09:20486306..20486330 (25 bp)
TTAGTTGAGGGACATCCGGTATCTG
NONE
Target Sequence 
TTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCATCCCGCAGCGAGGCGGCGTAG
GCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGGCGTCGGCCAGCAGCGGGGCGCGGTCCCGGCACAGCGCGAC
GGCCGCGCCACCCCCATGCAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGGCC
TCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGCTGGCCTGCCCGGAGAGAAGAGAGAAGAGAGAGAGAGGAGGAGGAAG
GGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGCCTAACATGGGGGTCCCACGTGGGTCCTACGCTGACTCAGCCAACA
CGTCAGATAAAACCGCGACCAAAACCACCGAGGGACCTAAAACAAACAGTTTTGTTAGTTGAGGGACATCCGGTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis