Browse Element(s) Details


Os.2673.1.S1_at

Description gb:AK062077.1
DB_XREF= gi:32972095
TID=Os.2673.1
CNT=116
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.2673 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for brain specific protein (S94 gene), complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F06, full insert sequence.
FL= gb:D16140.1 gb:AK103065.1 gb:AK062077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5029011/1114-3-3-like protein S94, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein
LOC_Os03g50310Os.17487.1.S1_at11/113+28636132..28638887CCT motif family protein, expressed
LOC_Os03g50320Os.4752.1.S1_at11/113+28639490..28645929Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2673.1.S1_at--898--1991Chr03:28615603..28615627 (25 bp)
ACTCACCCGATAAGGCTTGGACTTG
LOC_Os03g50290
Os.2673.1.S1_at--202--6031Chr03:28615654..28615678 (25 bp)
GAGATACTGAACTCACCAGACCGTG
LOC_Os03g50290
Os.2673.1.S1_at--912--4871Chr03:28616422..28616446 (25 bp)
GCTATTGCTGAACTGGACACTCTTG
LOC_Os03g50290
Os.2673.1.S1_at--737--10611Chr03:28616489..28616513 (25 bp)
TTCGTGACAATCTGACTCTCTGGAC
LOC_Os03g50290
Os.2673.1.S1_at--743--9511Chr03:28616505..28616527 (23 bp)
TCTCTGGACCTCTGACAATGCGGAG
LOC_Os03g50290
Os.2673.1.S1_at--1018--1331Chr03:28616683..28616707 (25 bp)
AGAGGGCCACTAATCTGTCCTGAAG
LOC_Os03g50290
Os.2673.1.S1_at--645--5331Chr03:28616704..28616728 (25 bp)
GAAGTCTATTTCTGAGTCCATTTAC
LOC_Os03g50290
Os.2673.1.S1_at--513--1571Chr03:28616731..28616755 (25 bp)
AGCTACCTGCTGTATTACTGGATCA
LOC_Os03g50290
Os.2673.1.S1_at--932--6811Chr03:28616847..28616871 (25 bp)
GTTTATGTGCACTACATTGCTTCCG
LOC_Os03g50290
Os.2673.1.S1_at--207--71Chr03:28616862..28616886 (25 bp)
ATTGCTTCCGTGACTTATTTACTAG
LOC_Os03g50290
Os.2673.1.S1_at--963--131Chr03:28616944..28616968 (25 bp)
ATTAGCGTTTTCCATGGGCTGGTTA
LOC_Os03g50290
Target Sequence 
ACTCACCCGATAAGGCTTGGACTTGCACTGAACTTCTCAGTGTTCTACTATGAGATACTGAACTCACCAGACCGTGCTTG
CAACCTTGCAAAGCAGGCGTTCGACGATGCTATTGCTGAACTGGACACTCTTGGCGAGGAGTCTTACAAGGACAGCACCT
TGATCATGCAACTTCTTCGTGACAATCTGACTCTCTGGACCTCTGACAATGCGGAGGATGGTGGTGACGAGATCAAGGAA
GCAGCGAAGCCTGAAGGAGAGGGCCACTAATCTGTCCTGAAGTCTATTTCTGAGTCCATTTACTCAGCTACCTGCTGTAT
TACTGGATCATAAGATGTACTAGGATCAATTGCTATGTGGAATCATAAGATTAGGGCTGCGTATGTCAAAATGTGTCGAG
CTGAAGTACCCAGTGGACACAGTTTATGTGCACTACATTGCTTCCGTGACTTATTTACTAGTTAATTAGCAACTTTCAAC
CACTTCCTGTATTTGCAGCACATTATTAGTATCGCTGTATTAGCGTTTTCCATGGGCTGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis