Browse Element(s) Details


Os.26738.1.S1_at

Description gb:AK100750.1
DB_XREF= gi:32985959
TID=Os.26738.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118K20, full insert sequence.
FL= gb:AK100750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4659010/11peptidase M50 family protein, putative, expressed
LOC_Os04g544501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46540NANA1+26823139..26826442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46554Os.47463.1.S1_x_at6/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46554Os.14491.2.S1_x_at5/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46590Os.26738.1.S1_at10/111+26849631..26854149peptidase M50 family protein, putative, expressed
LOC_Os01g46580Os.22471.2.S1_x_at11/111+26853580..26858468expressed protein
LOC_Os01g46580Os.22471.2.S1_at11/111+26853580..26858468expressed protein
LOC_Os01g46600Os.46021.1.S1_at8/111+26858869..26859332seed maturation protein PM41, putative, expressed
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26738.1.S1_at--1055--6812Chr05:28405491..28405510 (20 bp)
GTTTATTTCGTGTGTCTGCAGCATT
NONE
Os.26738.1.S1_at--295--10851NONE
TTGGCTGTAGTCAATCGCTTACCAG
NONE
Os.26738.1.S1_at--756--4891Chr01:26850136..26850617 (25 bp)
GCTTACCAGTGTACTTTCTTGACGG
LOC_Os01g46590
Os.26738.1.S1_at--496--4831Chr01:26850085..26850109 (25 bp)
GCTACTTTTCTTGGTTTACTCGGAG
LOC_Os01g46590
Os.26738.1.S1_at--697--1011Chr01:26850040..26850064 (25 bp)
AGGTTTGCCGCTTTTTGTGGACGAT
LOC_Os01g46590
Os.26738.1.S1_at--464--4051Chr01:26850019..26850043 (25 bp)
CGATCTTGTCCATTGTTTTGTTCTC
LOC_Os01g46590
Os.26738.1.S1_at--28--1452Chr04:32179844..32179864 (21 bp)
AGAACCCTGTATTCCATGACACTAT
LOC_Os04g54450
Os.26738.1.S1_at--630--752Chr05:14003386..14003406 (21 bp)
ATGTAAGACGGATGCTCTCCTGGTC
NONE
Os.26738.1.S1_at--586--9052Chr05:14003425..14003449 (25 bp)
TGCAGGCCAGCATTGTTACAGAACA
NONE
Os.26738.1.S1_at--700--4231Chr01:26849742..26849766 (25 bp)
CCGAGCCCTCATGCTTGTAGAATAT
LOC_Os01g46590
Os.26738.1.S1_at--858--7671Chr01:26849690..26849714 (25 bp)
GGGTATGCACCTCACTGTTGTAAGT
LOC_Os01g46590
Target Sequence 
GTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATCGCTTACCAGTGTACTTTCTTGACGGGGAAGCGATTTTGGAG
ACTATGTTAAGCTACTTTTCTTGGTTTACTCGGAGACAGCAGCGCAATATTCTTAAGGTTTGCCGCTTTTTGTGGACGAT
CTTGTCCATTGTTTTGTTCTCAAGAACCCTGTATTCCATGACACTATATTATGGCTTTGTATAACTCCTTTATATGGAAA
TGTCTCTTTTTTTTTTTTGAGTTTATCTTATCATAATACCATAGATCTGATCAACTGTATGAGATCATACACAATACTGG
TAATATGTAAGACGGATGCTCTCCTGGTCTCCTGACAAAATTGCAGGCCAGCATTGTTACAGAACAAAGTGGCCTTAACT
TTAGTGAGTTTATGATTAAAATTTAGACAATTCCCGAGCCCTCATGCTTGTAGAATATTTTGACCCAAGATATGAGTGGG
TTTGTGGGTATGCACCTCACTGTTGTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis