Browse Element(s) Details


Os.2674.1.S1_at

Description gb:D38753.1
DB_XREF= gi:976256
TID=Os.2674.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2674 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA stearyl-ACP desaturase, complete cds.
PROD=stearyl-ACP desaturase
FL= gb:D38753.1 gb:AK065340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3107011/11Acyl-desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0006952biological_processdefense response
GO:0008610biological_processlipid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0042742biological_processdefense response to bacteria
GO:0004768molecular_functionstearoyl-CoA 9-desaturase activity
GO:0045300molecular_functionacyl-[acyl-carrier protein] desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2674.1.S1_at--422--8511Chr04:18373359..18373383 (25 bp)
TGGAAAGTCGCAGATCTCACCGGGC
LOC_Os04g31070
Os.2674.1.S1_at--227--5331Chr04:18373319..18373343 (25 bp)
GAAGGGCTCAGGATTTCGTCTGCAC
LOC_Os04g31070
Os.2674.1.S1_at--863--1331Chr04:18373251..18373275 (25 bp)
AGAGCTAAGCAAGCGCCTGTTATTC
LOC_Os04g31070
Os.2674.1.S1_at--596--3871Chr04:18373235..18373259 (25 bp)
CTGTTATTCCTTTCAGCTGGGTTTA
LOC_Os04g31070
Os.2674.1.S1_at--831--4711Chr04:18373220..18373244 (25 bp)
GCTGGGTTTATGACCGCAAAGTGCA
LOC_Os04g31070
Os.2674.1.S1_at--134--2631Chr04:18373173..18373197 (25 bp)
AACCGAGACTGCATCCTATATATTG
LOC_Os04g31070
Os.2674.1.S1_at--1097--5251Chr04:18373091..18373115 (25 bp)
GAATGCAATTACCTGTCCATCTGCC
LOC_Os04g31070
Os.2674.1.S1_at--672--471Chr04:18373073..18373097 (25 bp)
ATCTGCCCTCACAAAATCTGTTGTC
LOC_Os04g31070
Os.2674.1.S1_at--937--7011Chr04:18372941..18372965 (25 bp)
GTACTTGCAGGTTTTACATGACTTG
LOC_Os04g31070
Os.2674.1.S1_at--874--1631Chr04:18372876..18372900 (25 bp)
AGCGTGTGCACTGTCGCATGATTAA
LOC_Os04g31070
Os.2674.1.S1_at--482--2271Chr04:18372843..18372867 (25 bp)
AAATCCAGACTATCTTTTGTGCTCT
LOC_Os04g31070
Target Sequence 
TGGAAAGTCGCAGATCTCACCGGGCTGTCCGGAGAAGGGAGAAGGGCTCAGGATTTCGTCTGCACGTTGGCGCCGAGAAT
CAGGCGGCTGGATGAAAGAGCCCAAGCAAGAGCTAAGCAAGCGCCTGTTATTCCTTTCAGCTGGGTTTATGACCGCAAAG
TGCAGCTTTGATCATGATCAGTGAGCAACCGAGACTGCATCCTATATATTGGTTCTAAGATATGAGGTTCTCTATATGGA
AAAAAATCTAGGTTATCTAGCTGGGGTAGAATGCAATTACCTGTCCATCTGCCCTCACAAAATCTGTTGTCTTTTAAGTT
GATAACAGTGTCGATGAGTCTGGTGAGAAGCTGATGTGAGATGCAACAGAGTGAACTTATGTTGTATTGATGTGAGATGA
GTATGGTGACATTTATGTGTACTTGCAGGTTTTACATGACTTGTATAAGTTTTAAAGTAATAATGGAGATTTGTATACAG
ACAAGCGTGTGCACTGTCGCATGATTAAGTAGTCTAAAATCCAGACTATCTTTTGTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis