Browse Element(s) Details


Os.2467.1.S1_at

Description gb:AF288196.3
DB_XREF= gi:17438152
TID=Os.2467.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2467 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. indica violaxanthin de-epoxidase precursor, mRNA, complete cds; nuclear gene for chloroplast product.
PROD=violaxanthin de-epoxidase precursor
FL= gb:AF411133.1 gb:AK061554.1 gb:AF288196.3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3104011/11violaxanthin de-epoxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0010028biological_processxanthophyll cycle
GO:0016122biological_processxanthophyll metabolism
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0046422molecular_functionviolaxanthin de-epoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2467.1.S1_at--940--5851Chr04:18364487..18364511 (25 bp)
GAGCCACCTCTTGTGGAGAGAATAG
LOC_Os04g31040
Os.2467.1.S1_at--366--5371Chr04:18364440..18364464 (25 bp)
GAAGACCATCATCAGGGAAGTGCAG
LOC_Os04g31040
Os.2467.1.S1_at--183--7371Chr04:18364325..18364349 (25 bp)
GTGAAACAGGACTTGATGAACTTCT
LOC_Os04g31040
Os.2467.1.S1_at--204--6251Chr04:18364278..18364302 (25 bp)
GATGGAGCTTTTGGATCAGATGAAC
LOC_Os04g31040
Os.2467.1.S1_at--40--1011Chr04:18364240..18364264 (25 bp)
AGGTTGAGAAGGTCTTCAGCCGCGC
LOC_Os04g31040
Os.2467.1.S1_at--195--4531Chr04:18364222..18364246 (25 bp)
GCCGCGCCCTGCCAATAAGGAAACT
LOC_Os04g31040
Os.2467.1.S1_at--186--3731Chr04:18364199..18364223 (25 bp)
CTAAGGTAGCTTCTAGTTGCCACTC
LOC_Os04g31040
Os.2467.1.S1_at--1161--10031Chr04:18364186..18364210 (25 bp)
TAGTTGCCACTCCAGCAAGTACAAG
LOC_Os04g31040
Os.2467.1.S1_at--429--10751Chr04:18364078..18364102 (25 bp)
TTGAATCTGCTAATGCATCCCCATT
LOC_Os04g31040
Os.2467.1.S1_at--739--131Chr04:18364053..18364077 (25 bp)
ATTACAATACATTTCCAGCTTAGAG
LOC_Os04g31040
Os.2467.1.S1_at--1034--6891Chr04:18364019..18364043 (25 bp)
GTATCAGTAACTATGTAACTTCCAT
LOC_Os04g31040
Target Sequence 
GAGCCACCTCTTGTGGAGAGAATAGAGAAGACCGTCGAGCAAGGAGAGAAGACCATCATCAGGGAAGTGCAGGAGATCGA
GGGCGAGATCGAGGGAGAGGTGAAGGAGCTGGAGGAGGAGGAGGTCACATTGTTCAAGAGGTTGACAGATGGCCTCATGG
AGGTGAAACAGGACTTGATGAACTTCTTTCAGGGGCTAAGCAAGGAGGAGATGGAGCTTTTGGATCAGATGAACATGGAA
GCAACTGAGGTTGAGAAGGTCTTCAGCCGCGCCCTGCCAATAAGGAAACTAAGGTAGCTTCTAGTTGCCACTCCAGCAAG
TACAAGGCAACAAGTAATGCTCAAAATATATTCTATTCACCAAGGCAATACCAATAGTAACAGATTATTNTACAGAGAAC
AAAGAATTTTTGAATCTGCTAATGCATCCCCATTATTACAATACATTTCCAGCTTAGAGNATATGTAAAGTATCAGTAAC
TATGTAACTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis