Browse Element(s) Details


Os.17392.1.S1_at

Description gb:AK065013.1
DB_XREF= gi:32975031
TID=Os.17392.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F06, full insert sequence.
FL= gb:AK065013.1 gb:AK104861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3101011/11Ycf49, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17392.1.S1_at--162--1271Chr04:18347920..18347944 (25 bp)
AGATAAAAGCTGCTGATGGCTTGCA
LOC_Os04g31010
Os.17392.1.S1_at--899--6231Chr04:18347906..18347930 (25 bp)
GATGGCTTGCAGCTACTTCAGAAAG
LOC_Os04g31010
Os.17392.1.S1_at--479--1312Chr09:20333534..20333588 (25 bp)
AGATGTTTGTATGTATCAATTCTAC
NONE
Os.17392.1.S1_at--414--5591Chr04:18347836..18347860 (25 bp)
GAAATTTGTGTATTGACTTGGTTTT
LOC_Os04g31010
Os.17392.1.S1_at--963--10372Chr09:20333462..20333486 (25 bp)
TTTTCTAGACAATGAGTGTATTTAC
NONE
Os.17392.1.S1_at--611--5371Chr04:18347779..18347803 (25 bp)
GAAGAAAAATTACCTCACCTGCTAT
LOC_Os04g31010
Os.17392.1.S1_at--295--2412Chr09:20333425..20333813 (25 bp)
AAAAATTACCTCACCTGCTATAGCC
NONE
Os.17392.1.S1_at--1153--132Chr09:20333421..20333444 (24 bp)
ATTACCTCACCTGCTATAGCCTATG
NONE
Os.17392.1.S1_at--1039--9071Chr04:18347760..18347784 (25 bp)
TGCTATAGCCTATGCCTCAACTCAT
LOC_Os04g31010
Os.17392.1.S1_at--161--10151Chr04:18347750..18347774 (25 bp)
TATGCCTCAACTCATCTTCAACTGT
LOC_Os04g31010
Os.17392.1.S1_at--549--4291Chr04:18347746..18347770 (25 bp)
CCTCAACTCATCTTCAACTGTTTTG
LOC_Os04g31010
Target Sequence 
AGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACNAATGCCAGCTAAAGCCA
CCCNTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCAC
CTGCTATAGCCTATGCCTCAACTCATCTTCAACTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis