Browse Element(s) Details


Os.38167.1.S1_at

Description gb:AK065694.1
DB_XREF= gi:32975712
TID=Os.38167.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035D10, full insert sequence.
FL= gb:AK065694.1 gb:AK059313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3100011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein
LOC_Os04g30950OsAffx.14058.1.S1_at10/114+18312977..18313812hypothetical protein
LOC_Os04g30960NANA4+18314970..18315230hypothetical protein
LOC_Os04g30970OsAffx.27200.1.S1_at1/114+18315647..18315886hypothetical protein
LOC_Os04g30980OsAffx.14061.1.S1_at10/114+18318084..18320399hypothetical protein
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38167.1.S1_at--278--171Chr04:18342955..18342979 (25 bp)
ATTTTGTTCTTGTCAAACCGTGCCG
LOC_Os04g31000
Os.38167.1.S1_at--885--2371Chr04:18342969..18342993 (25 bp)
AAACCGTGCCGCGATCTGTATAGAG
LOC_Os04g31000
Os.38167.1.S1_at--677--1311Chr04:18343009..18343033 (25 bp)
AGATGTCTGTCAGTTTTGGTCTCCA
LOC_Os04g31000
Os.38167.1.S1_at--375--3171Chr04:18343107..18343131 (25 bp)
AATTGCATTGCAGCTTCTGAGCCGT
LOC_Os04g31000
Os.38167.1.S1_at--1016--8491Chr04:18343140..18343164 (25 bp)
TGGCAGACCTGACCGTAACATGTTT
LOC_Os04g31000
Os.38167.1.S1_at--147--6131Chr04:18343294..18343318 (25 bp)
GAGGGCTGACTTTCAGTCACTTGGT
LOC_Os04g31000
Os.38167.1.S1_at--829--6191Chr04:18343328..18343352 (25 bp)
GAGGCAACATTTCCTTTGGTTTAAG
LOC_Os04g31000
Os.38167.1.S1_at--1083--1351Chr04:18343351..18343375 (25 bp)
AGAGCTTTGGTCATGTCACTTGCCA
LOC_Os04g31000
Os.38167.1.S1_at--967--7651Chr04:18343455..18343479 (25 bp)
GGGTCACCAACAGTCCAACGATAGT
LOC_Os04g31000
Os.38167.1.S1_at--591--9051Chr04:18343479..18343503 (25 bp)
TGCAGGGCTAACTCATCACGTGTGA
LOC_Os04g31000
Os.38167.1.S1_at--202--1891Chr04:18343496..18343517 (22 bp)
ACGTGTGACCTTCTCTACAACTAAA
LOC_Os04g31000
Target Sequence 
ATTTTGTTCTTGTCAAACCGTGCCGCGATCTGTATAGAGCTACAATAGGCGAGAAGATGTCTGTCAGTTTTGGTCTCCAT
TGCTGAGAGCCTTTCTAAATCATTGACAGTGTACGTTATAGAAGTGACTCCCAAAAGTTGGCCAGTGCATAGAATTGCAT
TGCAGCTTCTGAGCCGTCAGTAGGTTGGCAGACCTGACCGTAACATGTTTACTACACAATTGCTACTGCTGGATACGCAT
GTGATTTTCATTGTTTACAATGGTCTTGGTAGTAGCTGGAGATTGTGAACAGTTGACTAGTTGAGTATGAGTTCATCTTG
CTTGGCTAAAATTGAGCATGAGGGCTGACTTTCAGTCACTTGGTTTTGGTTTTGAGGCAACATTTCCTTTGGTTTAAGAG
CTTTGGTCATGTCACTTGCCATTTGCATAGGAAATGAAGATCAGGCATGCAGCATATGCATACGAATATGTGATGGACCG
GAACAATGTATTCCGGTTGGGGGTCACCAACAGTCCAACGATAGTGCAGGGCTAACTCATCACGTGTGACCTTCTCTACA
ACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis