Browse Element(s) Details


Os.51850.1.S1_at

Description gb:AK064080.1
DB_XREF= gi:32974098
TID=Os.51850.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B02, full insert sequence.
FL= gb:AK064080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3105011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51850.1.S1_at--949--2171Chr04:18370996..18371020 (25 bp)
ACACTTTGAGGCGTTCCTTGGTGAA
LOC_Os04g31050
Os.51850.1.S1_at--979--10571Chr04:18371315..18371339 (25 bp)
TTCTAGCTCACTTAGCGGGTGGCAT
LOC_Os04g31050
Os.51850.1.S1_at--290--1271Chr04:18371354..18371378 (25 bp)
AGATATCTGCAGACTGGCCACTGTC
LOC_Os04g31050
Os.51850.1.S1_at--222--9611Chr04:18371377..18371401 (25 bp)
TCATCCTGCGGCCTGAAGTTAATCT
LOC_Os04g31050
Os.51850.1.S1_at--147--10491Chr04:18371395..18371419 (25 bp)
TTAATCTCCATTCACAGTTCCAGGG
LOC_Os04g31050
Os.51850.1.S1_at--485--7571Chr04:18371417..18371441 (25 bp)
GGGCGCAGTCAGCAGATATTTCTTT
LOC_Os04g31050
Os.51850.1.S1_at--281--6611Chr04:18371645..18371669 (25 bp)
GATTGGAGCTTCAGACTCGTCGACA
LOC_Os04g31050
Os.51850.1.S1_at--1032--1331Chr04:18371712..18371736 (25 bp)
AGAGATGCGGTCGTAGCAGCTCCAT
LOC_Os04g31050
Os.51850.1.S1_at--191--5371Chr04:18371756..18371780 (25 bp)
GAAGACTAGACTTGACCCAACCAGC
LOC_Os04g31050
Os.51850.1.S1_at--922--6951Chr04:18371810..18371834 (25 bp)
GTAGCATATCAATCTCCGGGTGACC
LOC_Os04g31050
Os.51850.1.S1_at--1050--8911Chr04:18371830..18371854 (25 bp)
TGACCACCTTGTAAGCTTGCACGTT
LOC_Os04g31050
Target Sequence 
ACACTTTGAGGCGTTCCTTGGTGAAAGATGCTAATAATTCCAGGCATTCTTTTGAGTACATTGACAAAGATGGGACAATT
CTAGCTCACTTAGCGGGTGGCATTGATGCCTTCATCAAGATATCTGCAGACTGGCCACTGTCATCCTGCGGCCTGAAGTT
AATCTCCATTCACAGTTCCAGGGCGCAGTCAGCAGATATTTCTTTAGCTTTGCTTTCCAAAACAAAGGAACTGGCCAATG
GATTGGAGCTTCAGACTCGTCGACATCTGGTGAAGTTTGTAGATGCAATTGAAGATATTCTTTTTCGAGAGATGCGGTCG
TAGCAGCTCCATTCCAGCAAAGCATGTCTTAGAAGACTAGACTTGACCCAACCAGCCTCCCCATCATCTTGATGACAAGG
AGAACGTAGCATATCAATCTCCGGGTGACCACCTTGTAAGCTTGCACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis