Browse Element(s) Details


Os.26756.1.S2_at

Description gb:AK064765.1
DB_XREF= gi:32974783
TID=Os.26756.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H12, full insert sequence.
FL= gb:AK064765.1 gb:AK064159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0841010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08390Os.24830.1.S1_at11/114+4472144..4477245Leucine Rich Repeat family protein, expressed
LOC_Os04g08400OsAffx.24267.1.S1_at2/114+4484933..4490885retrotransposon protein, putative, unclassified
LOC_Os04g08410Os.26756.1.S1_at11/114+4496116..4500992expressed protein
LOC_Os04g08410Os.26756.1.S2_at10/114+4496116..4500992expressed protein
LOC_Os04g08430NANA4+4516288..4519579retrotransposon protein, putative, unclassified
LOC_Os04g08440NANA4+4520206..4526359retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26756.1.S2_at--686--2831Chr04:4496656..4496680 (25 bp)
AAGTTTAGTAGTTCACTTCTCTTGC
LOC_Os04g08410
Os.26756.1.S2_at--936--2051Chr04:4496642..4496666 (25 bp)
ACTTCTCTTGCTGTTGAGTGTCTTG
LOC_Os04g08410
Os.26756.1.S2_at--852--7411Chr04:4496585..4496609 (25 bp)
GTGTTTAACTTCTCTCATTGCCAAT
LOC_Os04g08410
Os.26756.1.S2_at--315--9191Chr04:4496567..4496591 (25 bp)
TGCCAATGGTTTCTGCGCGATATAA
LOC_Os04g08410
Os.26756.1.S2_at--275--6431Chr04:4496462..4496486 (25 bp)
GATAATACACTTCTCTCTTTGCGAA
LOC_Os04g08410
Os.26756.1.S2_at--167--5271Chr04:4496421..4496445 (25 bp)
GAATGCTTTCATCCACTGATTTCTT
LOC_Os04g08410
Os.26756.1.S2_at--255--5511Chr04:4496353..4496377 (25 bp)
GAACAAGTTGCTTACCGCTGCGGAA
LOC_Os04g08410
Os.26756.1.S2_at--360--5351Chr04:4496331..4496355 (25 bp)
GAAGATTTGACCGAAGCTTGCGATT
LOC_Os04g08410
Os.26756.1.S2_at--280--171Chr04:4496205..4496229 (25 bp)
ATTTTTACCGATGCTTCCTTGAAGG
LOC_Os04g08410
Os.26756.1.S2_at--1007--8731Chr04:4496173..4496197 (25 bp)
TGTACCATTTTCTAGTTTTATCCTT
LOC_Os04g08410
Os.26756.1.S2_at--639--1191Chr04:4496116..4496140 (25 bp)
AGTATGATTAACTGTTCCTTGCTCT
NONE
Target Sequence 
AAGTTTAGTAGTTCACTTCTCTTGCTGTTGAGTGTCTTGGATAAGGTTTAAATAGGCGGANTGGAGTTTTGGTGTTTAAC
TTCTCTCATTGCCAATGGTTTCTGCGCGATATAAAGAAGCTTACTGAAATTTGGCAATTAATTTCTTCCATTGCCAATGG
TTTCTGATCAGNTATAGAGAAGCCGATTGAGTTTGATAATACACTTCTCTCTTTGCGAAAAGTTTCTGATCAGATGAATG
CTTTCATCCACTGATTTCTTATGCAGACGGAAATGTAAATGCTTAAGTGCAAGCCAATCATTTGAACAAGTTGCTTACCG
CTGCGGAAGATTTGACCGAAGCTTGCGATTGAAGTTGGGAGGCAAGTTTTGATAGAGTGTAGTGGCACTGATATGTGAAC
AATCACATGGATTCATTATATCCACAAGGTGAAAAAGAGAACAGCGGTAGCATTTTTACCGATGCTTCCTTGAAGGTATC
ACATGTACCATTTTCTAGTTTTATCCTTTGTGTAAAGTAGTTTTGCATACATTGCACAGTAGTATGATTAACTGTTCCTT
GCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26756.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis