Browse Element(s) Details


Os.26781.1.S1_at

Description gb:AK065555.1
DB_XREF= gi:32975573
TID=Os.26781.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026N17, full insert sequence.
FL= gb:AK065555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g182949/11CRAL/TRIO domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18270NANA5+10490405..10492286retrotransposon protein, putative, unclassified
LOC_Os05g18280OsAffx.18753.2.S1_at7/115+10506156..10513596Kelch motif family protein
LOC_Os05g18280Os.46436.1.S1_at2/115+10506156..10513596Kelch motif family protein
LOC_Os05g18294Os.52239.1.S1_at11/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18294Os.26781.2.S1_x_at10/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18294Os.26781.1.S1_at9/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18310OsAffx.21779.1.S1_at10/115+10530121..10531675retrotransposon protein, putative, unclassified
LOC_Os05g18310OsAffx.21779.3.S1_at1/115+10530121..10531675retrotransposon protein, putative, unclassified
LOC_Os05g18320NANA5+10532859..10533261transposon protein, putative, unclassified
LOC_Os05g18330NANA5+10536555..10537823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18340OsAffx.22947.1.S1_x_at1/115+10538109..10544018retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26781.1.S1_at--503--8031Chr05:10517070..10517094 (25 bp)
GGAGTTTTAATCATCCAAACGGACA
LOC_Os05g18294
Os.26781.1.S1_at--439--6551Chr05:10517038..10517062 (25 bp)
GATTAGTCGACATCACTGAATCTCT
LOC_Os05g18294
Os.26781.1.S1_at--729--3331Chr05:10517025..10517049 (25 bp)
CACTGAATCTCTATTCTCTGTGGAG
LOC_Os05g18294
Os.26781.1.S1_at--887--591Chr05:10516999..10517023 (25 bp)
ATGCCTATTGCTTAATGACAGCTAA
LOC_Os05g18294
Os.26781.1.S1_at--809--5511Chr05:10516921..10516945 (25 bp)
GAAAACTACGTGCTCACCTTAGCTG
LOC_Os05g18294
Os.26781.1.S1_at--551--4831Chr05:10516910..10516934 (25 bp)
GCTCACCTTAGCTGTTTTAGATGTT
LOC_Os05g18294
Os.26781.1.S1_at--636--8111Chr05:10516861..10516885 (25 bp)
GGACGACATGTTGCGCATGATCAAA
LOC_Os05g18294
Os.26781.1.S1_at--1026--2351Chr05:10516836..10516860 (25 bp)
AAACCAGTTAATCCTTACAGTATGT
LOC_Os05g18294
Os.26781.1.S1_at--334--7071Chr05:10516807..10516831 (25 bp)
GTAATCTAATACTACCTCTGTTTTA
LOC_Os05g18294
Os.26781.1.S1_at--1115--5671NONE
GACATTTTTCTAAATCCACCTTCTT
NONE
Os.26781.1.S1_at--618--3371NONE
CACCTTCTTTTTAGCTTTGATCAAG
NONE
Target Sequence 
GGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATT
GCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGT
GCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCA
GTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTGACATTTTTCTAAAT
CCACCTTCTTTTTAGCTTTGATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis