Browse Element(s) Details


Os.26781.2.S1_x_at

Description gb:AK062790.1
DB_XREF= gi:32972808
TID=Os.26781.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C01, full insert sequence.
FL= gb:AK062790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1829410/11CRAL/TRIO domain containing protein, expressed
LOC_Os05g184701/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18270NANA5+10490405..10492286retrotransposon protein, putative, unclassified
LOC_Os05g18280OsAffx.18753.2.S1_at7/115+10506156..10513596Kelch motif family protein
LOC_Os05g18280Os.46436.1.S1_at2/115+10506156..10513596Kelch motif family protein
LOC_Os05g18294Os.52239.1.S1_at11/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18294Os.26781.2.S1_x_at10/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18294Os.26781.1.S1_at9/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18310OsAffx.21779.1.S1_at10/115+10530121..10531675retrotransposon protein, putative, unclassified
LOC_Os05g18310OsAffx.21779.3.S1_at1/115+10530121..10531675retrotransposon protein, putative, unclassified
LOC_Os05g18320NANA5+10532859..10533261transposon protein, putative, unclassified
LOC_Os05g18330NANA5+10536555..10537823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18340OsAffx.22947.1.S1_x_at1/115+10538109..10544018retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26781.2.S1_x_at--302--9451Chr05:10525898..10525922 (25 bp)
TCTGGTTTTTTATCGCTTTCTGAAA
LOC_Os05g18294
Os.26781.2.S1_x_at--1125--5171Chr05:10525843..10525867 (25 bp)
GCAATGAGTTTCCTGCTGAAGACTA
LOC_Os05g18294
Os.26781.2.S1_x_at--508--4511Chr05:10525802..10525826 (25 bp)
GCCGAAGTCGCCATCTTCTGAAGAA
LOC_Os05g18294
Os.26781.2.S1_x_at--532--10492Chr05:10518535..10518559 (25 bp)
TTCAAGTCCGGGAACTCCTGGGAAG
LOC_Os05g18294
Os.26781.2.S1_x_at--2--2671Chr05:10518513..10518537 (25 bp)
AAGCCTGGCAGCTGAGATGCCGGCA
LOC_Os05g18294
Os.26781.2.S1_x_at--775--1291Chr05:10518499..10518523 (25 bp)
AGATGCCGGCATTCTTATCAGACAC
LOC_Os05g18294
Os.26781.2.S1_x_at--324--3371Chr05:10518471..10518495 (25 bp)
CATCCGCCGTTTCCTAAGGGCAAGG
LOC_Os05g18294
Os.26781.2.S1_x_at--35--8171Chr05:10518435..10518459 (25 bp)
GGAACAAGCAACCAAGTCGCTCAAA
LOC_Os05g18294
Os.26781.2.S1_x_at--435--211Chr05:10518371..10518395 (25 bp)
ATTTGCTGGGTGCTCTCACAAATCC
LOC_Os05g18294
Os.26781.2.S1_x_at--924--10171Chr05:10518231..10518255 (25 bp)
TATAGCTGACTACCTTGATGCCAAA
LOC_Os05g18294
Os.26781.2.S1_x_at--219--6431NONE
GATCTATACTATTCACAAAGCCGAC
NONE
Target Sequence 
TCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTA
GGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGATAGTTCAAGTCCGGGAACTCCTGGGA
AGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGA
ACAAGCAACCAAGTCGCTCAAAGAAACTGTNAAGTGGAGGCGTCAGTACAGGCCAGAAAGCATTTGCTGGGTGCTCTCAC
AAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTG
GACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACT
ATTCACAAAGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26781.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis