Browse Element(s) Details


OsAffx.18753.2.S1_at

Description tigr:9633.m01643
TID=OsAffx.18753.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g182807/11Kelch motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18250NANA5+10481395..10481900hypothetical protein
LOC_Os05g18260NANA5+10484022..10485903retrotransposon protein, putative, unclassified
LOC_Os05g18270NANA5+10490405..10492286retrotransposon protein, putative, unclassified
LOC_Os05g18280OsAffx.18753.2.S1_at7/115+10506156..10513596Kelch motif family protein
LOC_Os05g18280Os.46436.1.S1_at2/115+10506156..10513596Kelch motif family protein
LOC_Os05g18294Os.52239.1.S1_at11/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18294Os.26781.2.S1_x_at10/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18294Os.26781.1.S1_at9/115+10516688..10525952CRAL/TRIO domain containing protein, expressed
LOC_Os05g18310OsAffx.21779.1.S1_at10/115+10530121..10531675retrotransposon protein, putative, unclassified
LOC_Os05g18310OsAffx.21779.3.S1_at1/115+10530121..10531675retrotransposon protein, putative, unclassified
LOC_Os05g18320NANA5+10532859..10533261transposon protein, putative, unclassified
LOC_Os05g18330NANA5+10536555..10537823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18340OsAffx.22947.1.S1_x_at1/115+10538109..10544018retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18753.2.S1_at--504--4171Chr05:10513507..10513529 (23 bp)
CGCCTCTTGTGTGCGGGTTCGGAAA
LOC_Os05g18280
OsAffx.18753.2.S1_at--823--4671NONE
GCGGGTTCGGAAATAGATTTACTCT
NONE
OsAffx.18753.2.S1_at--1071--3771NONE
CTCTGATCAGAGGTAATGTTAAAAA
NONE
OsAffx.18753.2.S1_at--987--2431Chr05:10513102..10513126 (25 bp)
AAAAGTTTGTGCTCTCAGGACATCT
LOC_Os05g18280
OsAffx.18753.2.S1_at--374--9831NONE
TAAACAGGCCAGTAATCACGACTAC
NONE
OsAffx.18753.2.S1_at--179--3491NONE
CAGGCCAGTAATCACGACTACGGTA
NONE
OsAffx.18753.2.S1_at--1097--8051Chr05:10506317..10506341 (25 bp)
GGAGAATGGCCAATGTATGCAACAG
LOC_Os05g18280
OsAffx.18753.2.S1_at--427--6051Chr05:10506293..10506317 (25 bp)
GAGATATCATTTGTTTGGCCATGCT
LOC_Os05g18280
OsAffx.18753.2.S1_at--700--10231Chr05:10506280..10506304 (25 bp)
TTTGGCCATGCTGGTTGTCCCAACC
LOC_Os05g18280
OsAffx.18753.2.S1_at--991--7911Chr05:10506268..10506292 (25 bp)
GGTTGTCCCAACCATTTGACATGTT
LOC_Os05g18280
OsAffx.18753.2.S1_at--364--8711Chr05:10506265..10506289 (25 bp)
TGTCCCAACCATTTGACATGTTTGG
LOC_Os05g18280
Target Sequence 
CGCCTCTTGTGTGCGGGTTCGGAAATAGATTTACTCTGATCAGAGGTAATGTTAAAAAGTTTGTGCTCTCAGGACATCTT
AGANNGNNNNNGTGNATNNAGNNNNNGCNNNTNNNNNTNNATNNNCANGGAAGCTTTGNTGANATTGCTATTGTNGCTGG
TGGGTGTGATAAGAATGGACAGGTGCTGAAATCTGCCGAGCTGTACAATTCAGAGACTGGTCATTGGGANACTTTNNCAG
ACATGAACTTGGCGAGGAGGCTCTCATCCNGTTTCTTCTTGGATGGTTTCTACAGNTNTANGNTNNCTTNNNNNNNNNNN
CTAAACAGGCCAGTAATCACGACTACGGTATTTGCATTGTATGGGGATCGTTGGTATCAGGGGATATACAAGGTTGAGGT
AAAATACATAGAGATAAAGATTTTTATACAGGTTCGAGCCCCTTCATCGGAAGGTGGAGAATGGCCAATGTATGCAACAG
AGATATCATTTGTTTGGCCATGCTGGTTGTCCCAACCATTTGACATGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18753.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis