Browse Element(s) Details


Os.26810.1.A1_s_at

Description gb:CB618623
DB_XREF= gi:29613610
DB_XREF=OSIIEa02K11.r
CLONE=OSIIEa02K11
TID=Os.26810.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26810 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567360.1 (A.thaliana) subtilisin-like serine protease (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1694011/11Subtilisin N-terminal Region family protein, expressed
LOC_Os06g322101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g319001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g318101/11hypothetical protein
LOC_Os06g323001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16890NANA2+9629924..9630448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16900NANA2+9632201..9635253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16910OsAffx.12078.1.S1_at11/112+9641649..9642212hypothetical protein
LOC_Os02g16920Os.27088.1.A1_x_at1/112+9644117..9645204hypothetical protein
LOC_Os02g16930OsAffx.12079.1.S1_at11/112+9647156..9647428hypothetical protein
LOC_Os02g16940Os.26810.1.A1_s_at11/112+9650593..9656893Subtilisin N-terminal Region family protein, expressed
LOC_Os02g16940OsAffx.28131.1.S1_at1/112+9650593..9656893Subtilisin N-terminal Region family protein, expressed
LOC_Os02g16950OsAffx.20387.1.S1_x_at1/112+9662975..9668952transposon protein, putative, unclassified
LOC_Os02g16960NANA2+9671765..9675730retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26810.1.A1_s_at--150--2191Chr02:9651132..9651156 (25 bp)
ACAAAGTTCTTTAACTGCTCCCTCG
LOC_Os02g16940
Os.26810.1.A1_s_at--985--7271Chr02:9651042..9651066 (25 bp)
GTGCCAGACCTCAAGGACTCAGTTA
LOC_Os02g16940
Os.26810.1.A1_s_at--588--5711Chr02:9651027..9651051 (25 bp)
GACTCAGTTATAGTCTGGCGCACTG
LOC_Os02g16940
Os.26810.1.A1_s_at--281--9011Chr02:9650942..9650966 (25 bp)
TGAATGTTGTTGTGGAGCCTCAGGT
LOC_Os02g16940
Os.26810.1.A1_s_at--26--4471Chr02:9650926..9650950 (25 bp)
GCCTCAGGTGATCACTTTCGCTAAA
LOC_Os02g16940
Os.26810.1.A1_s_at--63--2851Chr02:9650876..9650900 (25 bp)
AAGTCACATTTACAGCAAGGCAGAG
LOC_Os02g16940
Os.26810.1.A1_s_at--1057--10177Chr06:18473077..18473099 (22 bp)
TATACATTTGGGAGCTTGACATGGC
LOC_Os06g31810
Os.26810.1.A1_s_at--297--7931Chr02:9650789..9650813 (25 bp)
GGATTCCGGTAGCAGTACGCACTAT
LOC_Os02g16940
Os.26810.1.A1_s_at--816--771Chr02:9650682..9650706 (25 bp)
ATGTGCCCTTTCTTTTAGTATCAAG
LOC_Os02g16940
Os.26810.1.A1_s_at--197--3251Chr02:9650661..9650685 (25 bp)
CAAGCGTATTCTCGCATAACTATGT
LOC_Os02g16940
Os.26810.1.A1_s_at--1119--7031Chr02:9650638..9650662 (25 bp)
GTAATAATTCAACCCTGTACACCCT
LOC_Os02g16940
Target Sequence 
ACAAAGTTCTTTAACTGCTCCCTCGACCCCCAGGAAGACTGCAAGTCCTACATGGGGAAGCTCTACCAACTCAACCTCCC
ATCCATCGCTGTGCCAGACCTCAAGGACTCAGTTATAGTCTGGCGCACTGTCACCAACGTTGGAGGGTCAGAAGCAAATT
ACAAGGTGGTGGTTGAAGCACCAGCTGGGGTGAATGTTGTTGTGGAGCCTCAGGTGATCACTTTCGCTAAAGGTGGTAGT
CAAAGTGCAACATTTAAAGTCACATTTACAGCAAGGCAGAGAGTACAAGGTGGATATACATTTGGGAGCTTGACATGGCT
AGACGATAATACACACTCGATGAGGATTCCGGTAGCAGTACGCACTATAATCCAAGACTTTGTTTCAGATACCGCATAAT
TTCAAGAGGAAAACTAATAAGTCTTAGCAATATCCATTATATCATATAAAATGTGCCCTTTCTTTTAGTATCAAGCGTAT
TCTCGCATAACTATGTAATAATTCAACCCTGTACACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26810.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis