Browse Element(s) Details


OsAffx.12079.1.S1_at

Description tigr:9630.m01580
TID=OsAffx.12079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16880Os.18495.1.S1_at11/112+9617800..9623802membrane protein, putative, expressed
LOC_Os02g16890NANA2+9629924..9630448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16900NANA2+9632201..9635253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16910OsAffx.12078.1.S1_at11/112+9641649..9642212hypothetical protein
LOC_Os02g16920Os.27088.1.A1_x_at1/112+9644117..9645204hypothetical protein
LOC_Os02g16930OsAffx.12079.1.S1_at11/112+9647156..9647428hypothetical protein
LOC_Os02g16940Os.26810.1.A1_s_at11/112+9650593..9656893Subtilisin N-terminal Region family protein, expressed
LOC_Os02g16940OsAffx.28131.1.S1_at1/112+9650593..9656893Subtilisin N-terminal Region family protein, expressed
LOC_Os02g16950OsAffx.20387.1.S1_x_at1/112+9662975..9668952transposon protein, putative, unclassified
LOC_Os02g16960NANA2+9671765..9675730retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12079.1.S1_at--980--6131Chr02:9647363..9647387 (25 bp)
GAGGGAGGACAACAGACAAGACACA
LOC_Os02g16930
OsAffx.12079.1.S1_at--585--6191Chr02:9647359..9647383 (25 bp)
GAGGACAACAGACAAGACACACAAA
LOC_Os02g16930
OsAffx.12079.1.S1_at--783--9651Chr02:9647334..9647358 (25 bp)
TCAGAATAGACATCAACACACGCCG
LOC_Os02g16930
OsAffx.12079.1.S1_at--772--1471Chr02:9647332..9647356 (25 bp)
AGAATAGACATCAACACACGCCGCC
LOC_Os02g16930
OsAffx.12079.1.S1_at--71--3111Chr02:9647330..9647354 (25 bp)
AATAGACATCAACACACGCCGCCAA
LOC_Os02g16930
OsAffx.12079.1.S1_at--629--4393Chr12:12621146..12621166 (21 bp)
GCCAACAAAAGGGATCTAGCATCAT
NONE
OsAffx.12079.1.S1_at--18--2331Chr02:9647246..9647270 (25 bp)
AAAGGGATCTAGCATCATCTTTGAT
LOC_Os02g16930
OsAffx.12079.1.S1_at--411--5372Chr08:14070135..14070154 (20 bp)
GAAGACTATCCTGTCGTCGATTACA
NONE
OsAffx.12079.1.S1_at--85--5711Chr02:9647194..9647218 (25 bp)
GACTATCCTGTCGTCGATTACATGT
LOC_Os02g16930
OsAffx.12079.1.S1_at--27--3691Chr02:9647192..9647216 (25 bp)
CTATCCTGTCGTCGATTACATGTTG
LOC_Os02g16930
OsAffx.12079.1.S1_at--853--9271Chr02:9647189..9647213 (25 bp)
TCCTGTCGTCGATTACATGTTGGTG
LOC_Os02g16930
Target Sequence 
GAGGGAGGACAACAGACAAGACACACAAATCAGAATAGACATCAACACACGCCGCCAACACATCGACATCAGAGATAAGC
CTAGACAGACCCAATATGGTGCCTGCGGAGGCCAACAAAAGGGATCTAGCATCATCTTTGATCTCGATGAGTTCATATTC
GAGGAGGAAGACTATCCTGTCGTCGATTACATGTTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis