Browse Element(s) Details


Os.18495.1.S1_at

Description gb:AK071119.1
DB_XREF= gi:32981142
TID=Os.18495.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082M07, full insert sequence.
FL= gb:AK071119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1688011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16850OsAffx.24284.2.S1_at11/112+9600235..9601259Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16860NANA2+9603935..9608375transposon protein, putative, unclassified
LOC_Os02g16869NANA2+9612713..9613183NA
LOC_Os02g16880Os.18495.1.S1_at11/112+9617800..9623802membrane protein, putative, expressed
LOC_Os02g16890NANA2+9629924..9630448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16900NANA2+9632201..9635253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16910OsAffx.12078.1.S1_at11/112+9641649..9642212hypothetical protein
LOC_Os02g16920Os.27088.1.A1_x_at1/112+9644117..9645204hypothetical protein
LOC_Os02g16930OsAffx.12079.1.S1_at11/112+9647156..9647428hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010222biological_processstem vascular tissue pattern formation
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18495.1.S1_at--156--6611Chr02:9618314..9618338 (25 bp)
GATTGTCGTTTCAGGAGGCATGTCA
LOC_Os02g16880
Os.18495.1.S1_at--1006--7071Chr02:9618293..9618317 (25 bp)
GTCAATGCCTCAAGTTCTATCCATA
LOC_Os02g16880
Os.18495.1.S1_at--201--5391Chr02:9618225..9618249 (25 bp)
GAAGCTAAGATAACCCTCCTACGTG
LOC_Os02g16880
Os.18495.1.S1_at--625--1911Chr02:9618205..9618229 (25 bp)
ACGTGTGCCCAGATTTCGCTTGTAA
LOC_Os02g16880
Os.18495.1.S1_at--68--9771Chr02:9618183..9618207 (25 bp)
TAATCCCGTGTTTACTGGTTTCTGT
LOC_Os02g16880
Os.18495.1.S1_at--179--2991Chr02:9618131..9618155 (25 bp)
AATGTACAGTTCTCCTGGCTGGGAA
LOC_Os02g16880
Os.18495.1.S1_at--1029--2251Chr02:9618102..9618126 (25 bp)
AAATCACGCTGTGCACGCACTTAAG
LOC_Os02g16880
Os.18495.1.S1_at--708--9791Chr02:9618081..9618105 (25 bp)
TAAGCTGTCACTCCATTCAAATGCG
LOC_Os02g16880
Os.18495.1.S1_at--134--2291Chr02:9618063..9618087 (25 bp)
AAATGCGCGCGTGTGAACTTCGTTC
LOC_Os02g16880
Os.18495.1.S1_at--329--4131Chr02:9618049..9618073 (25 bp)
GAACTTCGTTCCTTAGGTTGGAGCT
LOC_Os02g16880
Os.18495.1.S1_at--348--5631Chr02:9617991..9618015 (25 bp)
GACACAGTTTATTCGCTTCATTTAT
LOC_Os02g16880
Target Sequence 
GATTGTCGTTTCAGGAGGCATGTCAATGCCTCAAGTTCTATCCATAGTGGAAACGGAGCAGAACCAATGGAGCAGGATGA
GATCTAGTCGAAGCTAAGATAACCCTCCTACGTGTGCCCAGATTTCGCTTGTAATCCCGTGTTTACTGGTTTCTGTAAGT
ACAAGGGTAGGATCCAATAGTAGAATGTACAGTTCTCCTGGCTGGGAATGCAAAATCACGCTGTGCACGCACTTAAGCTG
TCACTCCATTCAAATGCGCGCGTGTGAACTTCGTTCCTTAGGTTGGAGCTTCATGAGGTAGAGTTTGTCCTGACGGTTTA
GATGACACAGTTTATTCGCTTCATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis