Browse Element(s) Details


OsAffx.12078.1.S1_at

Description tigr:9630.m01578
TID=OsAffx.12078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1691011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16880Os.18495.1.S1_at11/112+9617800..9623802membrane protein, putative, expressed
LOC_Os02g16890NANA2+9629924..9630448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16900NANA2+9632201..9635253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16910OsAffx.12078.1.S1_at11/112+9641649..9642212hypothetical protein
LOC_Os02g16920Os.27088.1.A1_x_at1/112+9644117..9645204hypothetical protein
LOC_Os02g16930OsAffx.12079.1.S1_at11/112+9647156..9647428hypothetical protein
LOC_Os02g16940Os.26810.1.A1_s_at11/112+9650593..9656893Subtilisin N-terminal Region family protein, expressed
LOC_Os02g16940OsAffx.28131.1.S1_at1/112+9650593..9656893Subtilisin N-terminal Region family protein, expressed
LOC_Os02g16950OsAffx.20387.1.S1_x_at1/112+9662975..9668952transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12078.1.S1_at--464--2731Chr02:9642082..9642106 (25 bp)
AAGAAGCAGCCGAAGTTTGCGCCCA
LOC_Os02g16910
OsAffx.12078.1.S1_at--728--7211Chr02:9642026..9642050 (25 bp)
GTCGAACTCCTGCAACATCAACAAA
LOC_Os02g16910
OsAffx.12078.1.S1_at--966--9351Chr02:9641990..9642014 (25 bp)
TCGAACCCAAAATCATCTCCTCTGA
LOC_Os02g16910
OsAffx.12078.1.S1_at--329--2451Chr02:9641982..9642006 (25 bp)
AAAATCATCTCCTCTGATCCATCCT
LOC_Os02g16910
OsAffx.12078.1.S1_at--661--9391Chr02:9641946..9641970 (25 bp)
TCGATTGATGCATGGTCGATTCAAC
LOC_Os02g16910
OsAffx.12078.1.S1_at--510--4992Chr02:9641937..9641961 (25 bp)
GCATGGTCGATTCAACCAAATCCAT
LOC_Os02g16910
OsAffx.12078.1.S1_at--391--11Chr02:9641910..9641934 (25 bp)
GGGTTTCTTGGGAGCAACTTGCCGC
LOC_Os02g16910
OsAffx.12078.1.S1_at--530--5151Chr02:9641897..9641921 (25 bp)
GCAACTTGCCGCCTTGATGTGTCCG
LOC_Os02g16910
OsAffx.12078.1.S1_at--604--3591Chr02:9641753..9641777 (25 bp)
CATTATTGCCGCCTCCTAGGAGCAC
LOC_Os02g16910
OsAffx.12078.1.S1_at--513--6391Chr02:9641711..9641735 (25 bp)
GATCGATTCCTACCGATTCTTGATT
LOC_Os02g16910
OsAffx.12078.1.S1_at--664--4231Chr02:9641683..9641707 (25 bp)
CCGACGCGAGGAACAGGACGATGCT
LOC_Os02g16910
Target Sequence 
AAGAAGCAGCCGAAGTTTGCGCCCACCACGCATTGCCACCCCACCCCGTACCTCTTGTCGAACTCCTGCAACATCAACAA
ACAAACAACAAATCGAACCCAAAATCATCTCCTCTGATCCATCCTGCACAATCGAATCGATTGATGCATGGTCGATTCAA
CCAAATCCATGGGGGTTTCTTGGGAGCAACTTGCCGCCTTGATGTGTCCGGCGATGGCGCGGCAGTCGGCGACGTCGAAG
AGGTCGAGCGCCCGCGACGCCGCGGACGTGGCCGCCGCCTGCATCCGCGCCGGCATGTCCGTGTCCTCCACCCGCGCCTT
CCCCTCCAGCATTATTGCCGCCTCCTAGGAGCACCTACCACTCAACCCCTCGATCGATTCCTACCGATTCTTGATTCCCC
CGACGCGAGGAACAGGACGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis