Browse Element(s) Details


OsAffx.24284.2.S1_at

Description tigr:9630.m01572
TID=OsAffx.24284.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alpha-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1685011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.1.S1_a_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.2.S1_s_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16839OsAffx.24284.5.S1_at11/112+9589064..9590038Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16850OsAffx.24284.2.S1_at11/112+9600235..9601259Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16860NANA2+9603935..9608375transposon protein, putative, unclassified
LOC_Os02g16869NANA2+9612713..9613183NA
LOC_Os02g16880Os.18495.1.S1_at11/112+9617800..9623802membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24284.2.S1_at--421--9211Chr02:9600792..9600816 (25 bp)
TCCACGGCCGCACTTCGATATGGCG
LOC_Os02g16850
OsAffx.24284.2.S1_at--843--1271Chr02:9600751..9600775 (25 bp)
AGATCGGTATTTACCGTGCCGGCAT
LOC_Os02g16850
OsAffx.24284.2.S1_at--750--3971Chr02:9600549..9600573 (25 bp)
CGGGCATGACTACTTCAATCTCGTT
LOC_Os02g16850
OsAffx.24284.2.S1_at--1051--671Chr02:9600544..9600568 (25 bp)
ATGACTACTTCAATCTCGTTCTTGT
LOC_Os02g16850
OsAffx.24284.2.S1_at--950--10751Chr02:9600523..9600547 (25 bp)
TTGTGACCAACGTTGCAACCACCGG
LOC_Os02g16850
OsAffx.24284.2.S1_at--676--2631Chr02:9600507..9600531 (25 bp)
AACCACCGGCTTGATCAAGTCGATG
LOC_Os02g16850
OsAffx.24284.2.S1_at--554--9011Chr02:9600429..9600453 (25 bp)
TGCAAATTGGCACTCGTTATCGTAT
LOC_Os02g16850
OsAffx.24284.2.S1_at--816--1991Chr02:9600418..9600442 (25 bp)
ACTCGTTATCGTATCTCACTGGACA
LOC_Os02g16850
OsAffx.24284.2.S1_at--413--451Chr02:9600406..9600430 (25 bp)
ATCTCACTGGACAGATGCTTTCCTT
LOC_Os02g16850
OsAffx.24284.2.S1_at--992--6331Chr02:9600393..9600417 (25 bp)
GATGCTTTCCTTTAGGGTGACCAAC
LOC_Os02g16850
OsAffx.24284.2.S1_at--122--7151Chr02:9600350..9600374 (25 bp)
GTCTTCAGAAACATTGTGCCGTCAG
LOC_Os02g16850
Target Sequence 
TCCACGGCCGCACTTCGATATGGCGCAGCCGGCCTGGGAGAAGATCGGTATTTACCGTGCCGGCATCATCCCCGTCATCT
ACCAAAGGGTTCCATGTGTAAAGAAGGGTGGTGTGCGGTTCACCATCAACGGGCATGACTACTTCAATCTCGTTCTTGTG
ACCAACGTTGCAACCACCGGCTTGATCAAGTCGATGGATGTGATGGGCTCCAACTCAACCGACTGGCTGCCAATGGTGAG
AAACTGGGGTGCAAATTGGCACTCGTTATCGTATCTCACTGGACAGATGCTTTCCTTTAGGGTGACCAACATGGACGGCC
AGACGCTTGTCTTCAGAAACATTGTGCCGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24284.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis