Browse Element(s) Details


OsAffx.24284.5.S1_at

Description tigr:9630.m01571
TID=OsAffx.24284.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to alpha-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1683911/11Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g1680911/11Rare lipoprotein A like double-psi beta-barrel containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.1.S1_a_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.2.S1_s_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16839OsAffx.24284.5.S1_at11/112+9589064..9590038Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16850OsAffx.24284.2.S1_at11/112+9600235..9601259Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16860NANA2+9603935..9608375transposon protein, putative, unclassified
LOC_Os02g16869NANA2+9612713..9613183NA

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24284.5.S1_at--615--4972Chr02:9578922..9578946 (25 bp)
GCATCATACCGGTCATCTATCAAAG
LOC_Os02g16809
OsAffx.24284.5.S1_at--301--1432Chr02:9578988..9579012 (25 bp)
AGAACAGTGCATATCCTGACCGCTG
LOC_Os02g16809
OsAffx.24284.5.S1_at--939--5512Chr02:9579022..9579046 (25 bp)
GAAAATATCCTACTCTTGCGATGAT
LOC_Os02g16809
OsAffx.24284.5.S1_at--532--9152Chr02:9579038..9579062 (25 bp)
TGCGATGATTTCTACAGGGTTCCTT
LOC_Os02g16809
OsAffx.24284.5.S1_at--44--8432Chr02:9579076..9579100 (25 bp)
TGGCCTGCGGTTCACCATTAACGGT
LOC_Os02g16809
OsAffx.24284.5.S1_at--270--10052Chr02:9579117..9579141 (25 bp)
TAGTACTGGTGACCAACGTCGCGGC
LOC_Os02g16809
OsAffx.24284.5.S1_at--1086--4692Chr02:9579137..9579161 (25 bp)
GCGGCGGCAGGGTCAATCAAGTCCA
LOC_Os02g16809
OsAffx.24284.5.S1_at--625--6792Chr02:9579167..9579191 (25 bp)
GTTATGGGTTCCAACACAGCGGATT
LOC_Os02g16809
OsAffx.24284.5.S1_at--450--7792Chr02:9579254..9579278 (25 bp)
GGTCTATCCTTTAGGGTCACCAACA
LOC_Os02g16809
OsAffx.24284.5.S1_at--200--2132Chr02:9579278..9579302 (25 bp)
ACAGATGACCAAACGCTCGTCTTCA
LOC_Os02g16809
OsAffx.24284.5.S1_at--738--3192Chr02:9579304..9579328 (25 bp)
CAACGTCGTGCCACCAGGATGGAAG
LOC_Os02g16809
Target Sequence 
GCATCATACCGGTCATCTATCAAAGGTACCAATACAAATACTCCAATTATTTTGGACATTATGGAGAGAACAGTGCATAT
CCTGACCGCTGCTTCCATATGAAAATATCCTACTCTTGCGATGATTTCTACAGGGTTCCTTGCGTGAAGAAGGGTGGCCT
GCGGTTCACCATTAACGGTCACGACTACTTCCAGCTAGTACTGGTGACCAACGTCGCGGCGGCAGGGTCAATCAAGTCCA
TGGAGGTTATGGGTTCCAACACAGCGGATTGGATGCCGATGGCACGTAACTGGGGCGCCCAATGGCACTCACTGGCCTAC
CTCACCGGTCAAGGTCTATCCTTTAGGGTCACCAACACAGATGACCAAACGCTCGTCTTCACCAACGTCGTGCCACCAGG
ATGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24284.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis