Browse Element(s) Details


OsAffx.12076.1.S1_at

Description tigr:9630.m01565
TID=OsAffx.12076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1677011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.1.S1_a_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.2.S1_s_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16839OsAffx.24284.5.S1_at11/112+9589064..9590038Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12076.1.S1_at--972--5991Chr02:9566844..9566868 (25 bp)
GAGACCTGAGGATCCACGTCAGCGA
LOC_Os02g16770
OsAffx.12076.1.S1_at--171--10011Chr02:9566887..9566911 (25 bp)
TAGCTGCCGGCTGCGAGAGATGTAC
LOC_Os02g16770
OsAffx.12076.1.S1_at--752--7051Chr02:9567171..9567195 (25 bp)
GTAACTTGATTCCTGTTGGCCAAAT
LOC_Os02g16770
OsAffx.12076.1.S1_at--471--10871Chr02:9567186..9567210 (25 bp)
TTGGCCAAATCTTATTGCCCACAAG
LOC_Os02g16770
OsAffx.12076.1.S1_at--986--6511Chr02:9567855..9567879 (25 bp)
GATTTCCCAACCGACACTACGAAGA
LOC_Os02g16770
OsAffx.12076.1.S1_at--16--9191Chr02:9568121..9568145 (25 bp)
TGCCGATGCCTGATCCGTCATGGGA
LOC_Os02g16770
OsAffx.12076.1.S1_at--389--9291Chr02:9568134..9568158 (25 bp)
TCCGTCATGGGAACGGCCGCTGAAG
LOC_Os02g16770
OsAffx.12076.1.S1_at--1036--4751Chr02:9568152..9568176 (25 bp)
GCTGAAGCCACATCCGCTGCGAGAA
LOC_Os02g16770
OsAffx.12076.1.S1_at--667--5631Chr02:9568231..9568255 (25 bp)
GACACTGCCGGATCCATTTTTGCTT
LOC_Os02g16770
OsAffx.12076.1.S1_at--942--171Chr02:9568246..9568270 (25 bp)
ATTTTTGCTTGCTGTCACTATCGAC
LOC_Os02g16770
OsAffx.12076.1.S1_at--1034--7091Chr02:9568259..9568283 (25 bp)
GTCACTATCGACTCAGCCGATCGAA
LOC_Os02g16770
Target Sequence 
GAGACCTGAGGATCCACGTCAGCGACCTGTCGCCGCAGGTGGATAGCTGCCGGCTGCGAGAGATGTACAGCGAGCACGGG
AAGGTGGTGCGGGCCGGCGAGGGTCGCGTACGACAAGCGGGGGGCGATCGCGAGGGTTTGGGTTGGTTAGCAGTTGGATG
TAACTTGATTCCTGTTGGCCAAATCTTATTGCCCACAAGATTTCCCAACCGACACTACGAAGACGGCATTGATGAGGACT
CAAAGGTGACTGGCATCTTTGAGGAGGATCTGCCAGGGGAGCTCCTGCCGATGCCTGATCCGTCATGGGAACGGCCGCTG
AAGCCACATCCGCTGCGAGAACCCTCGCCGACACCGCATCCACCCGCTTCCGACGCCGTCGCTCACGCCGCCACCGACAC
TGCCGGATCCATTTTTGCTTGCTGTCACTATCGACTCAGCCGATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis