Browse Element(s) Details


OsAffx.24284.4.S1_x_at

Description tigr:9630.m01566
TID=OsAffx.24284.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alpha-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1678011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.1.S1_a_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.2.S1_s_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16839OsAffx.24284.5.S1_at11/112+9589064..9590038Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24284.4.S1_x_at--416--8631Chr02:9570026..9570050 (25 bp)
TGGGACCTGCCCAGCGACAATGGTG
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--984--2811Chr02:9570104..9570128 (25 bp)
AAGATTGGCATCTACAGCGCGGGCA
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--281--9871Chr02:9570116..9570140 (25 bp)
TACAGCGCGGGCATCATCCCGGTTA
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--543--4571Chr02:9570120..9570144 (25 bp)
GCGCGGGCATCATCCCGGTTATCTA
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--239--3991Chr02:9570302..9570326 (25 bp)
CGGGCACGACTACTTCAATCTTGTG
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--233--8251Chr02:9570430..9570454 (25 bp)
GGCACTCACTATCGTATCTCACAGG
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--393--2011Chr02:9570433..9570457 (25 bp)
ACTCACTATCGTATCTCACAGGGCA
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--130--3331Chr02:9570436..9570460 (25 bp)
CACTATCGTATCTCACAGGGCAGAC
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--774--511Chr02:9570440..9570464 (25 bp)
ATCGTATCTCACAGGGCAGACGCTC
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--123--7151Chr02:9570501..9570525 (25 bp)
GTCTTCAAGAACATTGTGCCATCTG
LOC_Os02g16780
OsAffx.24284.4.S1_x_at--795--4431Chr02:9570518..9570542 (25 bp)
GCCATCTGGATGGAAATTTGGGCAA
LOC_Os02g16780
Target Sequence 
TGGGACCTGCCCAGCGACAATGGTGGCTGGTGCAACCCGCCGCGGCCGCACTTCGACATGGCGCAGCCGGCGTGGGAGAA
GATTGGCATCTACAGCGCGGGCATCATCCCGGTTATCTACCAAAGGGTTCCATGCATAAAGAAGGGTGGGGTGCGGTTTA
CCATTAACGGGCACGACTACTTCAATCTTGTGCTCGTGACAAACGTTGCAACCACTGGTTCGATCAAGTCAATGGACATC
ATGGGATCCAACTCAACCGACTGGATGCCAATGGTGAGAAACTGGGGTGCAAACTGGCACTCACTATCGTATCTCACAGG
GCAGACGCTCTCCTTCAGGGTGACTAACATGGATGGCCAGACGCTTGTCTTCAAGAACATTGTGCCATCTGGATGGAAAT
TTGGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24284.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis