Browse Element(s) Details


Os.11372.1.S1_a_at

Description gb:AK107238.1
DB_XREF= gi:32992447
TID=Os.11372.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11372 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for preproglutelin
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F02, full insert sequence.
FL= gb:AK107238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1683011/11Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g1682011/11Glutelin type-B 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.1.S1_a_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.2.S1_s_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16839OsAffx.24284.5.S1_at11/112+9589064..9590038Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16850OsAffx.24284.2.S1_at11/112+9600235..9601259Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16860NANA2+9603935..9608375transposon protein, putative, unclassified
LOC_Os02g16869NANA2+9612713..9613183NA

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11372.1.S1_a_at--75--8452Chr02:9582044..9582068 (25 bp)
TGGCGTTCTACGTCCAGGTCAATTG
LOC_Os02g16820
Os.11372.1.S1_a_at--47--8352Chr02:9582045..9582069 (25 bp)
GGCGTTCTACGTCCAGGTCAATTGC
LOC_Os02g16820
Os.11372.1.S1_a_at--118--4632Chr02:9582046..9582070 (25 bp)
GCGTTCTACGTCCAGGTCAATTGCT
LOC_Os02g16820
Os.11372.1.S1_a_at--1121--6713Chr02:9582048..9582072 (25 bp)
GTTCTACGTCCAGGTCAATTGCTGA
LOC_Os02g16820
Os.11372.1.S1_a_at--1079--10572Chr02:9582049..9582073 (25 bp)
TTCTACGTCCAGGTCAATTGCTGAT
LOC_Os02g16820
Os.11372.1.S1_a_at--1029--9512Chr02:9582050..9582074 (25 bp)
TCTACGTCCAGGTCAATTGCTGATC
LOC_Os02g16820
Os.11372.1.S1_a_at--348--9932Chr02:9582052..9582076 (25 bp)
TACGTCCAGGTCAATTGCTGATCAT
LOC_Os02g16820
Os.11372.1.S1_a_at--336--1912Chr02:9582053..9582077 (25 bp)
ACGTCCAGGTCAATTGCTGATCATT
LOC_Os02g16820
Os.11372.1.S1_a_at--557--7272Chr02:9582055..9582079 (25 bp)
GTCCAGGTCAATTGCTGATCATTCC
LOC_Os02g16820
Os.11372.1.S1_a_at--931--1532Chr02:9582109..9582133 (25 bp)
AGCATGAAGGATGCCAATACATTTC
LOC_Os02g16820
Os.11372.1.S1_a_at--448--652Chr02:9582112..9582136 (25 bp)
ATGAAGGATGCCAATACATTTCATT
LOC_Os02g16820
Target Sequence 
TGGCGTTCTACGTCCAGGTCAATTGCTGATCATTCCNCAANACTACGNTGTCTTGAAGAAAGCAGAGCATGAAGGATGCC
AATACATTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11372.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis