Browse Element(s) Details


Os.11372.2.S1_s_at

Description gb:BI802197
DB_XREF= gi:16574901
DB_XREF=H073E08
CLONE=H073E08
TID=Os.11372.2
CNT=25
FEA=EST
TIER=Stack
STK=22
UG=Os.11372 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for preproglutelin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1682011/11Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g1683011/11Glutelin type-B 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.1.S1_a_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16830Os.11372.2.S1_s_at11/112+9586005..9587996Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16839OsAffx.24284.5.S1_at11/112+9589064..9590038Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16850OsAffx.24284.2.S1_at11/112+9600235..9601259Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16860NANA2+9603935..9608375transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11372.2.S1_s_at--255--10212Chr02:9581939..9581963 (25 bp)
TATTCTCTCTCCGTTTTGGAACGTT
LOC_Os02g16820
Os.11372.2.S1_s_at--841--9512Chr02:9581942..9581966 (25 bp)
TCTCTCTCCGTTTTGGAACGTTAAT
LOC_Os02g16820
Os.11372.2.S1_s_at--221--8512Chr02:9581955..9581979 (25 bp)
TGGAACGTTAATGCCCATAGCCTGG
LOC_Os02g16820
Os.11372.2.S1_s_at--664--1872Chr02:9581959..9581983 (25 bp)
ACGTTAATGCCCATAGCCTGGTGTA
LOC_Os02g16820
Os.11372.2.S1_s_at--129--612Chr02:9581965..9581989 (25 bp)
ATGCCCATAGCCTGGTGTATATCGT
LOC_Os02g16820
Os.11372.2.S1_s_at--475--4552Chr02:9581967..9581991 (25 bp)
GCCCATAGCCTGGTGTATATCGTTC
LOC_Os02g16820
Os.11372.2.S1_s_at--434--3572Chr02:9581970..9581994 (25 bp)
CATAGCCTGGTGTATATCGTTCAAG
LOC_Os02g16820
Os.11372.2.S1_s_at--261--4392Chr02:9582122..9582146 (25 bp)
CCAATACATTTCATTCAAGACCAAT
LOC_Os02g16820
Os.11372.2.S1_s_at--954--9872Chr02:9582126..9582150 (25 bp)
TACATTTCATTCAAGACCAATGCAA
LOC_Os02g16820
Os.11372.2.S1_s_at--148--4072Chr02:9582235..9582259 (25 bp)
CGAGGGAGCAAGCACGAAGCCTTAA
LOC_Os02g16820
Os.11372.2.S1_s_at--786--5952Chr02:9582240..9582264 (25 bp)
GAGCAAGCACGAAGCCTTAAGAATA
LOC_Os02g16820
Target Sequence 
TATTCTCTCTCCGTTTTGGAACGTTAATGCCCATAGCCTGGTGTATATCGTTCAAGGGCATGCTCGAGTTCAGNTCGTTA
GTAACCTTGGAAAGACGGTATTCAATGGCGTTCTACGTCCAGGTCAATTGCTGATCATTCCGCAATACTACGCTGTCTTG
AAGAAAGCAGAGCATGAAGGATGCCAATACATTTCATTCAAGACCAATGCAANNTCCATGGTGAGCCACCTTGCAGGGAA
GAACTCAATATTCCGTGCCATGCCAGTCGATGTGATCGCTAATGCTTACCGCATATCGAGGGAGCAAGCACGAAGCCTTA
AGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11372.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis