Browse Element(s) Details


OsAffx.12074.1.S1_at

Description tigr:9630.m01560
TID=OsAffx.12074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable signal peptidase i-1 (ec 3.4.21.89) (spase i-1) (leader peptidase i-1). (strain pcc 6803
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1670911/11signal peptidase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12074.1.S1_at--980--931Chr02:9548699..9548723 (25 bp)
AGGCAAGGCCCGCTATGGCAACTCC
LOC_Os02g16709
OsAffx.12074.1.S1_at--287--10111Chr02:9548712..9548736 (25 bp)
TATGGCAACTCCTCAGCCACATGGC
LOC_Os02g16709
OsAffx.12074.1.S1_at--672--1691Chr02:9548726..9548750 (25 bp)
AGCCACATGGCAGTTCTACTTTGGG
LOC_Os02g16709
OsAffx.12074.1.S1_at--306--811Chr02:9548752..9548776 (25 bp)
ATGGTGGCGTCAGTCTTGCAGGAAC
LOC_Os02g16709
OsAffx.12074.1.S1_at--225--4651Chr02:9548758..9548782 (25 bp)
GCGTCAGTCTTGCAGGAACGGCATT
LOC_Os02g16709
OsAffx.12074.1.S1_at--1162--8991Chr02:9548768..9548792 (25 bp)
TGCAGGAACGGCATTGATGTTTGAG
LOC_Os02g16709
OsAffx.12074.1.S1_at--974--7511Chr02:9548802..9548826 (25 bp)
GTGGATGTGAATGCTGGAACAGTCT
LOC_Os02g16709
OsAffx.12074.1.S1_at--572--5271Chr02:9548810..9548834 (25 bp)
GAATGCTGGAACAGTCTCACTCCCA
LOC_Os02g16709
OsAffx.12074.1.S1_at--796--2491Chr02:9548819..9548843 (25 bp)
AACAGTCTCACTCCCACTTGCAGTG
LOC_Os02g16709
OsAffx.12074.1.S1_at--1088--2051Chr02:9548834..9548854 (21 bp)
ACTTGCAGTGGCTAGGGCGGTTCAT
LOC_Os02g16709
OsAffx.12074.1.S1_at--575--7271Chr02:9548842..9549249 (25 bp)
TGGCTAGGGCGGTTCATAAAGGAAA
LOC_Os02g16709
Target Sequence 
AGGCAAGGCCCGCTATGGCAACTCCTCAGCCACATGGCAGTTCTACTTTGGGGATGGTGGCGTCAGTCTTGCAGGAACGG
CATTGATGTTTGAGATGCTGAGTGTGGATGTGAATGCTGGAACAGTCTCACTCCCACTTGCAGTGGCTAGGGCGGTTCAT
AAAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis