Browse Element(s) Details


Os.24736.1.A1_at

Description gb:AK106502.1
DB_XREF= gi:32991711
TID=Os.24736.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F04, full insert sequence.
FL= gb:AK106502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1669011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24736.1.A1_at--748--9391Chr02:9541999..9542023 (25 bp)
TCGTTGGTTCTATTGGGATGACTGT
LOC_Os02g16690
Os.24736.1.A1_at--571--1971Chr02:9542036..9542060 (25 bp)
ACTGACGGTGGGATGCACCATCGGC
LOC_Os02g16690
Os.24736.1.A1_at--582--9651Chr02:9542088..9542112 (25 bp)
TCAGCGTCGGTGGTAAGGGCTAAAC
LOC_Os02g16690
Os.24736.1.A1_at--484--10851Chr02:9542125..9542149 (25 bp)
TTGGAGCTAGGTGGTGACAGATTAT
LOC_Os02g16690
Os.24736.1.A1_at--1071--2131Chr02:9542141..9542165 (25 bp)
ACAGATTATGCGGTGGAGTACTTAA
LOC_Os02g16690
Os.24736.1.A1_at--912--4791Chr02:9542197..9542221 (25 bp)
GCTCGCCGGTGTTGTTTGTGCCTTC
LOC_Os02g16690
Os.24736.1.A1_at--578--10251Chr02:9542211..9542235 (25 bp)
TTTGTGCCTTCTGGCCAACCAATGA
LOC_Os02g16690
Os.24736.1.A1_at--434--2651Chr02:9542227..9542251 (25 bp)
AACCAATGATGCTTGGTGGCGGCAT
LOC_Os02g16690
Os.24736.1.A1_at--841--2691Chr02:9542278..9542302 (25 bp)
AAGCTCGCGTCACACTTGTGCTGCG
LOC_Os02g16690
Os.24736.1.A1_at--851--6411Chr02:9542342..9542366 (25 bp)
GATCATATTGTTACGTACGAATCTT
LOC_Os02g16690
Os.24736.1.A1_at--1133--9931Chr02:9542388..9542412 (25 bp)
TACGAAAGACATGAGCTACGATTTT
LOC_Os02g16690
Target Sequence 
TCGTTGGTTCTATTGGGATGACTGTGGGTGTTGGAGGACTGACGGTGGGATGCACCATCGGCGCCGTGGGGACGGAGGAG
AACGATGGGTCAGCGTCGGTGGTAAGGGCTAAACAAAGCAGTTGGTTTGGAGCTAGGTGGTGACAGATTATGCGGTGGAG
TACTTAATGGAGACGTGAATTAGGGGAGGGGGGGAGGGGCTCGCCGGTGTTGTTTGTGCCTTCTGGCCAACCAATGATGC
TTGGTGGCGGCATCAGTGCTCGAGGAAGTGTGCGGGGGCAAGCTCGCGTCACACTTGTGCTGCGTGCGGCTAGGGAAGAA
GGAGAATGGGAGGAAAATGATAAGATCATATTGTTACGTACGAATCTTAAAGCATATAGTTGTCCAAAATACGAAAGACA
TGAGCTACGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24736.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis