Browse Element(s) Details


Os.53301.1.S1_at

Description gb:AK071896.1
DB_XREF= gi:32981919
TID=Os.53301.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057J17, full insert sequence.
FL= gb:AK104958.1 gb:AK071896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1666011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16600Os.8797.1.S1_at11/112+9489228..9494238expressed protein
LOC_Os02g16610OsAffx.12070.1.S1_at11/112+9495105..9495710Harpin-induced protein 1 containing protein
LOC_Os02g16620Os.6361.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16620Os.51924.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16630OsAffx.12071.1.S1_s_at11/112+9502473..9505302N-anthranilate isomerase family protein, expressed
LOC_Os02g16640Os.5630.1.S1_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16640Os.5630.1.S1_s_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019538biological_processprotein metabolism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53301.1.S1_at--871--8531Chr02:9514853..9514877 (25 bp)
TGGACCCAAGCTGCAGCATCGAGGT
LOC_Os02g16660
Os.53301.1.S1_at--1029--2971Chr02:9514776..9514800 (25 bp)
AATGGTGGCCTTGTAGACACGCTGC
LOC_Os02g16660
Os.53301.1.S1_at--477--4771Chr02:9514756..9514780 (25 bp)
GCTGCTCATCAATGCCCGTGAGAAT
LOC_Os02g16660
Os.53301.1.S1_at--339--3611Chr02:9514719..9514743 (25 bp)
CTTGATTTCAACTGCGACGATGCGA
LOC_Os02g16660
Os.53301.1.S1_at--324--5412Chr04:10658233..10658378 (24 bp)
GAAGCTGGCCTTAAGCAGATCTCCA
NONE
Os.53301.1.S1_at--234--1531Chr02:9514649..9514673 (25 bp)
AGCAGATCTCCAAACAGCGGCAGTT
LOC_Os02g16660
Os.53301.1.S1_at--315--2151Chr02:9514636..9514660 (25 bp)
ACAGCGGCAGTTGCAGTGACACCAA
LOC_Os02g16660
Os.53301.1.S1_at--806--3171Chr02:9514584..9514608 (25 bp)
AATTGGAAGCTCATCGACATCAGAC
LOC_Os02g16660
Os.53301.1.S1_at--661--10711Chr02:9514497..9514521 (25 bp)
TTGCTGGCTATTCTTTCTGTTGTAT
LOC_Os02g16660
Os.53301.1.S1_at--800--7831Chr02:9514457..9514481 (25 bp)
GGTAAGATTTATGCCCTTCTACAAT
LOC_Os02g16660
Os.53301.1.S1_at--176--6951Chr02:9514417..9514441 (25 bp)
GTAGTTCTTTATTATTCCCATTGAG
LOC_Os02g16660
Target Sequence 
TGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAAT
GGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAA
TACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACC
AACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTT
TGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTA
AGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis