Browse Element(s) Details

Os.5630.1.S1_s_at

Description

gb:AK060957.1
DB_XREF= gi:32970975
TID=Os.5630.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G11, full insert sequence.
FL= gb:AK060957.1 gb:AK073513.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g16640	11/11	U1 zinc finger family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g16590	NA	NA	2	+	9479608..9484114	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16600	Os.8797.1.S1_at	11/11	2	+	9489228..9494238	expressed protein
LOC_Os02g16610	OsAffx.12070.1.S1_at	11/11	2	+	9495105..9495710	Harpin-induced protein 1 containing protein
LOC_Os02g16620	Os.6361.1.S1_at	11/11	2	+	9497685..9500376	reticulon family protein, putative, expressed
LOC_Os02g16620	Os.51924.1.S1_at	11/11	2	+	9497685..9500376	reticulon family protein, putative, expressed
LOC_Os02g16630	OsAffx.12071.1.S1_s_at	11/11	2	+	9502473..9505302	N-anthranilate isomerase family protein, expressed
LOC_Os02g16640	Os.5630.1.S1_at	11/11	2	+	9505847..9509896	U1 zinc finger family protein, expressed
LOC_Os02g16640	Os.5630.1.S1_s_at	11/11	2	+	9505847..9509896	U1 zinc finger family protein, expressed
LOC_Os02g16650	Os.49173.1.S1_at	11/11	2	+	9510000..9514046	pentatricopeptide, putative, expressed
LOC_Os02g16660	Os.53301.1.S1_at	11/11	2	+	9514337..9518276	ATPase, AAA family protein, expressed
LOC_Os02g16670	Os.16612.1.S1_at	8/11	2	+	9523651..9531796	PP-loop family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0031225	cellular_component	anchored to membrane
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5630.1.S1_s_at--1065--529	1	Chr02:9506084..9506108 (25 bp)	GAAGGCTTCTTGTAACTGTATCTGT	LOC_Os02g16640
Os.5630.1.S1_s_at--989--829	1	Chr02:9506081..9506105 (25 bp)	GGCTTCTTGTAACTGTATCTGTGCA	LOC_Os02g16640
Os.5630.1.S1_s_at--814--705	1	Chr02:9506073..9506097 (25 bp)	GTAACTGTATCTGTGCATCTGGTGA	LOC_Os02g16640
Os.5630.1.S1_s_at--134--197	1	Chr02:9506070..9506094 (25 bp)	ACTGTATCTGTGCATCTGGTGATGG	LOC_Os02g16640
Os.5630.1.S1_s_at--317--497	1	Chr02:9506059..9506083 (25 bp)	GCATCTGGTGATGGTATTTTAGATA	LOC_Os02g16640
Os.5630.1.S1_s_at--104--765	1	Chr02:9505965..9505989 (25 bp)	GGGATCGTTCCTCAAATATTTGGCA	LOC_Os02g16640
Os.5630.1.S1_s_at--45--429	1	Chr02:9505956..9505980 (25 bp)	CCTCAAATATTTGGCATGGCTCTGT	LOC_Os02g16640
Os.5630.1.S1_s_at--729--19	1	Chr02:9505948..9505972 (25 bp)	ATTTGGCATGGCTCTGTAGTACTAG	LOC_Os02g16640
Os.5630.1.S1_s_at--710--827	1	Chr02:9505944..9505968 (25 bp)	GGCATGGCTCTGTAGTACTAGTTTC	LOC_Os02g16640
Os.5630.1.S1_s_at--921--831	1	Chr02:9505939..9505963 (25 bp)	GGCTCTGTAGTACTAGTTTCTGTGA	LOC_Os02g16640
Os.5630.1.S1_s_at--508--371	1	Chr02:9505927..9505951 (25 bp)	CTAGTTTCTGTGATGATTTGTTCTT	LOC_Os02g16640

Target Sequence

GAAGGCTTCTTGTAACTGTATCTGTGCATCTGGTGATGGTATTTTAGATATGTAACGTTAATTTTGTAATCTGCTGAAGT
TAGTATTGATTTCAGAACACATTTACCAAAGCTGGTAACGGGATCGTTCCTCAAATATTTGGCATGGCTCTGTAGTACTA
GTTTCTGTGATGATTTGTTCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis