Browse Element(s) Details


Os.49173.1.S1_at

Description gb:AK103371.1
DB_XREF= gi:32988580
TID=Os.49173.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127A08, full insert sequence.
FL= gb:AK099647.1 gb:AK103371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1665011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16600Os.8797.1.S1_at11/112+9489228..9494238expressed protein
LOC_Os02g16610OsAffx.12070.1.S1_at11/112+9495105..9495710Harpin-induced protein 1 containing protein
LOC_Os02g16620Os.6361.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16620Os.51924.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16630OsAffx.12071.1.S1_s_at11/112+9502473..9505302N-anthranilate isomerase family protein, expressed
LOC_Os02g16640Os.5630.1.S1_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16640Os.5630.1.S1_s_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49173.1.S1_at--702--9851Chr02:9513463..9513487 (25 bp)
TACAGTGGAGCTATCCACCGGTGGT
LOC_Os02g16650
Os.49173.1.S1_at--1106--6991Chr02:9513531..9513555 (25 bp)
GTACTTCTCGCTTATAAAACTGTCA
LOC_Os02g16650
Os.49173.1.S1_at--166--5391Chr02:9513591..9513615 (25 bp)
GAAGCTTGTTTTTCTGAGGACCAAA
LOC_Os02g16650
Os.49173.1.S1_at--122--6271Chr02:9513628..9513652 (25 bp)
GATGTGGTGGACATGTGCTCCATAT
LOC_Os02g16650
Os.49173.1.S1_at--986--6751Chr02:9513769..9513793 (25 bp)
GTTAAGGTTCTTGTCATGTTGTATG
LOC_Os02g16650
Os.49173.1.S1_at--426--10811Chr02:9513787..9513811 (25 bp)
TTGTATGATCTGTTTCTCGCTGGCC
LOC_Os02g16650
Os.49173.1.S1_at--154--7191Chr02:9513816..9513840 (25 bp)
GTCTGTGCTCTTTTGTCATTCTATA
LOC_Os02g16650
Os.49173.1.S1_at--906--10551Chr02:9513852..9513876 (25 bp)
TTCTTGTGAATGCTGTCGCTGTTGC
LOC_Os02g16650
Os.49173.1.S1_at--499--9031Chr02:9513874..9513898 (25 bp)
TGCACCTATAGCTCAACTGTACATG
LOC_Os02g16650
Os.49173.1.S1_at--608--5131Chr02:9513961..9513985 (25 bp)
GCAAATGTTTATGTATCTTTCTCAA
LOC_Os02g16650
Os.49173.1.S1_at--187--2851Chr02:9514022..9514046 (25 bp)
AAGTAACGTGATAGACTTCCTGAGG
LOC_Os02g16650
Target Sequence 
TACAGTGGAGCTATCCACCGGTGGTGAGCCTCNCACANCCTTGGATCCNCCCTGNGCTTCATGNCAAAGTACTTCTCGCT
TATAAAACTGTCATATAANTTTGGAAGNTCAAACATTATNACAGCATCGAAGCTTGTTTTTCTGAGGACCAAAGTCAAGA
ATCCNGATGTGGTGGACATGTGCTCCATATATNTTGTTCTACNTTGGTCTCGAAATATAAGAGAACCNGATACTTCTTCA
NAATCCCTTATATTTTGGATAGAGGTAATAAAAATTATGTATAGTGGAGATCTGAGATCCTCAAGAGTTAAGGTTCTTGT
CATGTTGTATGATCTGTTTCTCGCTGGCCCCCTGTCTGTGCTCTTTTGTCATTCTATAGAAAGATATCATTCTTGTGAAT
GCTGTCGCTGTTGCACCTATAGCTCAACTGTACATGATAAGGGCATCATGTGTAAACTATGATCTTTTTTATAAAAGGTG
AACTGAATGTCATCACATGCAAATGTTTATGTATCTTTCTCAAAACATGATACTAGCTGGATCAGCTATTTGAATATGAA
AGTAACGTGATAGACTTCCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis