Browse Element(s) Details


Os.49514.1.S1_at

Description gb:L34551.1
DB_XREF= gi:556408
GEN=RITA-1
TID=Os.49514.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49514 (NCBI UniGene Cluster)
DEF=Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.
PROD=transcriptional activator protein
FL= gb:L34551.1 gb:AK070674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1668011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49514.1.S1_at--943--2611Chr02:9536327..9536351 (25 bp)
AACCGGGAGTCTGCTCGTCGATCAA
LOC_Os02g16680
Os.49514.1.S1_at--519--6331Chr02:9536043..9536067 (25 bp)
GATGCCAATCAGCAATTCACGACGG
LOC_Os02g16680
Os.49514.1.S1_at--1027--3071Chr02:9536037..9536061 (25 bp)
AATCAGCAATTCACGACGGCGGTCA
LOC_Os02g16680
Os.49514.1.S1_at--870--8631Chr02:9535629..9535653 (25 bp)
TGGGACAACCACTCCAATGGCGCCA
LOC_Os02g16680
Os.49514.1.S1_at--925--2951Chr02:9535614..9535638 (25 bp)
AATGGCGCCATGTCCAAGTGAAAAC
LOC_Os02g16680
Os.49514.1.S1_at--393--7351Chr02:9535597..9535621 (25 bp)
GTGAAAACTACTTCTTACTGCTTTG
LOC_Os02g16680
Os.49514.1.S1_at--492--9551Chr02:9535585..9535609 (25 bp)
TCTTACTGCTTTGTCAGCTCAGCTA
LOC_Os02g16680
Os.49514.1.S1_at--1079--9651Chr02:9535572..9535596 (25 bp)
TCAGCTCAGCTACGTATAAAAATGT
LOC_Os02g16680
Os.49514.1.S1_at--609--2391Chr02:9535555..9535579 (25 bp)
AAAAATGTGATGTCCCAAGTGAACG
LOC_Os02g16680
Os.49514.1.S1_at--34--1351Chr02:9535516..9535540 (25 bp)
AGAGTCCTCGTGTCGTGTCAAGTGT
LOC_Os02g16680
Os.49514.1.S1_at--100--9431Chr02:9535504..9535528 (25 bp)
TCGTGTCAAGTGTCGTCCTGTAATA
LOC_Os02g16680
Target Sequence 
AACCGGGAGTCTGCTCGTCGATCAAGGAAGAGAAAGCAAGCTCACTTAGCTGATCTCGAGACGCAGGTTGACCAGCTCCG
GGGCGAAAACGCATCGCTTTTCAAGCAGTTGACAGATGCCAATCAGCAATTCACGACGGCGGTCACGGACAACAGAATCC
TCAAATCAGACGTGGAGGCCCTCCGGGTCAAGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGC
CTCGGCCACCTGGGCGGGCTGTCGCCGGCGCTGAACCCCCGGCAGGGGGCGTGCCGCGTCCCCGACGTGCTCACCGGGCT
GGACTACGCCGGCGACGACCCCTTCACCGGGCTGTCCCCGCCGGAGCAGGTGCAGATGCCCGGCGGTGGCGAGGTGGGTG
ACGCCTGGGGCTGGGACAACCACTCCAATGGCGCCATGTCCAAGTGAAAACTACTTCTTACTGCTTTGTCAGCTCAGCTA
CGTATAAAAATGTGATGTCCCAAGTGAACGGACTTGAGTTTTTCAGAGTCCTCGTGTCGTGTCAAGTGTCGTCCTGTAAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis