Browse Element(s) Details


Os.6361.1.S1_at

Description gb:AK059921.1
DB_XREF= gi:32969939
TID=Os.6361.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G09, full insert sequence.
FL= gb:AK059921.1 gb:AK104196.1 gb:AK072628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1662011/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16570NANA2+9473871..9474074hypothetical protein
LOC_Os02g16580NANA2+9475114..9477681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16590NANA2+9479608..9484114transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16600Os.8797.1.S1_at11/112+9489228..9494238expressed protein
LOC_Os02g16610OsAffx.12070.1.S1_at11/112+9495105..9495710Harpin-induced protein 1 containing protein
LOC_Os02g16620Os.6361.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16620Os.51924.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16630OsAffx.12071.1.S1_s_at11/112+9502473..9505302N-anthranilate isomerase family protein, expressed
LOC_Os02g16640Os.5630.1.S1_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16640Os.5630.1.S1_s_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6361.1.S1_at--1155--10851Chr02:9499688..9499712 (25 bp)
TTGGAAGCCTCTGTGATTTCCTGAC
LOC_Os02g16620
Os.6361.1.S1_at--489--6531Chr02:9499702..9499726 (25 bp)
GATTTCCTGACCCTGTTTTACGTTG
LOC_Os02g16620
Os.6361.1.S1_at--866--9931Chr02:9499720..9499837 (25 bp)
TACGTTGCTGTCTTGATGCTCCATA
LOC_Os02g16620
Os.6361.1.S1_at--18--9871Chr02:9499836..9499860 (25 bp)
TACAGTGCCGATCTTGTATCACAAG
LOC_Os02g16620
Os.6361.1.S1_at--1070--891Chr02:9499892..9499916 (25 bp)
AGGCGCATGTGGAACTCAGCAGGCA
LOC_Os02g16620
Os.6361.1.S1_at--985--1511Chr02:9499909..9499933 (25 bp)
AGCAGGCAGTACTCTGTTCTCGACG
LOC_Os02g16620
Os.6361.1.S1_at--795--6711Chr02:9499924..9499948 (25 bp)
GTTCTCGACGCAAAGGTTCTCAGCA
LOC_Os02g16620
Os.6361.1.S1_at--1020--5531Chr02:9499994..9500018 (25 bp)
GAAACACCATATCACGCTGGAACCT
LOC_Os02g16620
Os.6361.1.S1_at--411--8031Chr02:9500025..9500049 (25 bp)
GGAGTGTTGGCATCTCACATCACAA
LOC_Os02g16620
Os.6361.1.S1_at--469--6091Chr02:9500066..9500090 (25 bp)
GAGTCCTTGACTTGGTTTGGCCCTT
LOC_Os02g16620
Os.6361.1.S1_at--906--9011Chr02:9500214..9500238 (25 bp)
TGCAAGCCTGCAACCATATATGATA
LOC_Os02g16620
Target Sequence 
TTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAG
TATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGT
TCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGA
CTTGGGAGTGTTGGCATCTCACATCACAACATATGCATGAATCTTGAGTCCTTGACTTGGTTTGGCCCTTGTTGGTGCTT
GGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAACTGTCGATATGATGTGGTTGGTGT
GCAACTCTGCAATGTTAATATACAAGATCTTGCTGCAAGCCTGCAACCATATATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis