Browse Element(s) Details


Os.26825.1.S1_at

Description gb:AK064992.1
DB_XREF= gi:32975010
TID=Os.26825.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter ATP-binding protein (P0665D10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001D15, full insert sequence.
FL= gb:AK064992.1 gb:AK063157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1194611/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11920Os.43464.1.S1_at11/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920OsAffx.11218.1.S1_at7/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.8736.1.S1_a_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11920Os.12757.3.S1_at1/111+6468834..6482309retrotransposon protein, putative, unclassified
LOC_Os01g11930NANA1+6488336..6488558NA
LOC_Os01g11940Os.30557.2.S2_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.2.S1_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.1.S1_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0015916biological_processfatty acyl coenzyme A transport
GO:0005777cellular_componentperoxisome
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26825.1.S1_at--135--211Chr01:6497906..6497930 (25 bp)
ATTTGAGCAACATTTGCCCCTGAGC
LOC_Os01g11946
Os.26825.1.S1_at--688--4531Chr01:6497891..6497915 (25 bp)
GCCCCTGAGCAGTTTTGTCGCAAGA
LOC_Os01g11946
Os.26825.1.S1_at--963--8711Chr01:6497876..6497900 (25 bp)
TGTCGCAAGATTTCACCCATACGTG
LOC_Os01g11946
Os.26825.1.S1_at--1128--9151Chr01:6497841..6497865 (25 bp)
TGCCCAGCCAAGTACCCAAAATATG
LOC_Os01g11946
Os.26825.1.S1_at--362--2371Chr01:6497745..6497769 (25 bp)
AAACCAACTCGAGGCGTGGCACAGA
LOC_Os01g11946
Os.26825.1.S1_at--1135--7511Chr01:6497730..6497754 (25 bp)
GTGGCACAGATTTTAGCACCTAAAG
LOC_Os01g11946
Os.26825.1.S1_at--583--9471Chr01:6497688..6497712 (25 bp)
TCTGTTCTTGGATCGTTATACCACG
LOC_Os01g11946
Os.26825.1.S1_at--626--10131Chr01:6497636..6497660 (25 bp)
TATGCAGTCCTCTGATCTTTTTGAG
LOC_Os01g11946
Os.26825.1.S1_at--842--8211Chr01:6497591..6497615 (25 bp)
GGAATATCTGAAACTGTCTCTTTGT
LOC_Os01g11946
Os.26825.1.S1_at--1064--6791Chr01:6497568..6497592 (25 bp)
GTTATTACGTGTGTGGTGTGTCCTT
LOC_Os01g11946
Os.26825.1.S1_at--667--7731Chr01:6497554..6497578 (25 bp)
GGTGTGTCCTTGTAACTATACTGGG
LOC_Os01g11946
Target Sequence 
ATTTGAGCAACATTTGCCCCTGAGCAGTTTTGTCGCAAGATTTCACCCATACGTGAAGTGTATGGTGCCCAGCCAAGTAC
CCAAAATATGTCATGCTGATTGTTCTAAAGATGTGATGCTTGAGTAGTTGAGTTGTATGACCAAAATTGCTAGTATGCTA
CAAACCAACTCGAGGCGTGGCACAGATTTTAGCACCTAAAGGTTGAAAGGGAAGCTCATCTGTTCTTGGATCGTTATACC
ACGAAGTTCAGAATGAACATCATATGTAGATATGCAGTCCTCTGATCTTTTTGAGTTTCTTTTAGAAATGACGACGGAAT
ATCTGAAACTGTCTCTTTGTTATTACGTGTGTGGTGTGTCCTTGTAACTATACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis