Browse Element(s) Details


Os.26831.1.A1_a_at

Description gb:CB620016
DB_XREF= gi:29615003
DB_XREF=OSIIEa04P05.r
CLONE=OSIIEa04P05
TID=Os.26831.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26831 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4390611/11ceramide kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed
LOC_Os02g43940Os.50637.1.S1_at11/112+26518717..26519783AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26831.1.A1_a_at--1140--1251Chr02:26499003..26499027 (25 bp)
AGATTTGGTCACTATCCCTGTTTGC
LOC_Os02g43906
Os.26831.1.A1_a_at--500--9651Chr02:26498915..26498939 (25 bp)
TCAGATCCTCTGAGCTTCAAGTTTG
LOC_Os02g43906
Os.26831.1.A1_a_at--584--3951Chr02:26498745..26498769 (25 bp)
CGGAGAACTTCTTCAGGCCTGTGAG
LOC_Os02g43906
Os.26831.1.A1_a_at--589--6151Chr02:26498723..26498747 (25 bp)
GAGGTATCTGTTCAAGCTTTCCGAG
LOC_Os02g43906
Os.26831.1.A1_a_at--488--10811Chr02:26498695..26498719 (25 bp)
TTGTCAACCTCTTTGCGTCAGGACC
LOC_Os02g43906
Os.26831.1.A1_a_at--1004--8091Chr02:26498675..26498699 (25 bp)
GGACCGGAGGTGTAGCTATTCCCTT
LOC_Os02g43906
Os.26831.1.A1_a_at--438--8091Chr02:26498632..26498656 (25 bp)
GGACGATTGCAAAAGGCCCCGGCGT
LOC_Os02g43906
Os.26831.1.A1_a_at--267--4271Chr02:26498614..26498638 (25 bp)
CCGGCGTGTTGTACTTGTATGCTGT
LOC_Os02g43906
Os.26831.1.A1_a_at--490--10671Chr02:26498582..26498606 (25 bp)
TTCCTGTTCGATACTCTGTTGCTAT
LOC_Os02g43906
Os.26831.1.A1_a_at--25--2171Chr02:26498534..26498558 (25 bp)
ACAGCGCCCAGATTACGGAATGCAG
LOC_Os02g43906
Os.26831.1.A1_a_at--387--7231Chr02:26498501..26498525 (25 bp)
GTCGCTTCAATTTTGCCACCGGAAA
LOC_Os02g43906
Target Sequence 
AGATTTGGTCACTATCCCTGTTTGCAGAGTATGTTCTTATGAGTTCTGACTTATCTGCAGGCATCTAACACAATTTACCA
AGAAGGGCTCAGATCCTCTGAGCTTCAAGTTTGTCGAACATCATAAGACACAAGCATTTACTTTTATATCGTCACATGAC
GAAAGTGTCTGGAACTTGGACGGAGAACTTCTTCAGGCCTGTGAGGTATCTGTTCAAGCTTTCCGAGGCCTTGTCAACCT
CTTTGCGTCAGGACCGGAGGTGTAGCTATTCCCTTCTCTTTTTTCTCCCGAAGGGACGATTGCAAAAGGCCCCGGCGTGT
TGTACTTGTATGCTGTACAGAAGTTCCTGTTCGATACTCTGTTGCTATTTTTTCTGTAGAAAATGGNAAACACAGCGCCC
AGATTACGGAATGCAGAAGCCTGGGTCGCTTCAATTTTGCCACCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26831.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis