Browse Element(s) Details


Os.26853.1.A1_at

Description gb:CB622304
DB_XREF= gi:29617292
DB_XREF=OSIIEa08N17.r
CLONE=OSIIEa08N17
TID=Os.26853.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26853 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0401011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed
LOC_Os02g03980OsAffx.11884.1.S1_at11/112+1719673..1720857F-box protein interaction domain containing protein
LOC_Os02g03990OsAffx.2499.1.S1_at11/112+1723476..1727642transducin family protein, putative
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04020Os.7324.1.S1_at11/112+1743661..1748216phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os02g04030Os.9614.1.S1_at11/112+1748459..1753225Phosphatidylinositol/phosphatidylcholine transfer protein, putative, expressed
LOC_Os02g04040Os.21109.1.S1_at5/112+1754861..1757771SMC family, C-terminal domain containing protein, expressed
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26853.1.A1_at--756--5931Chr02:1734539..1734563 (25 bp)
GAGCATCCAGCTCCTATTGATAAAT
LOC_Os02g04010
Os.26853.1.A1_at--769--2271Chr02:1734518..1734542 (25 bp)
AAATCTGACACTAAGTCCTGGATCA
LOC_Os02g04010
Os.26853.1.A1_at--192--52Chr04:5141322..5141341 (20 bp)
ATTGTCTCGATCTATAGTTTCCCAC
NONE
Os.26853.1.A1_at--579--6071Chr02:1734300..1734324 (25 bp)
GAGTAACTTAATCTGCTGGCGTACA
LOC_Os02g04010
Os.26853.1.A1_at--808--4711Chr02:1734286..1734310 (25 bp)
GCTGGCGTACAGCAATTGCTCATAA
LOC_Os02g04010
Os.26853.1.A1_at--570--71Chr02:1734272..1734296 (25 bp)
ATTGCTCATAATTTGCCTTGGGAAG
LOC_Os02g04010
Os.26853.1.A1_at--572--2991Chr02:1734213..1734237 (25 bp)
AATGTATGCCATTTTTCCCTGTATA
LOC_Os02g04010
Os.26853.1.A1_at--367--1671Chr02:1734145..1734169 (25 bp)
AGCCATGTGGCGCAAAGTTTTGTAA
LOC_Os02g04010
Os.26853.1.A1_at--404--6811Chr02:1734095..1734119 (25 bp)
GTTTTTCTTCTAATGTAGCCTAGGA
LOC_Os02g04010
Os.26853.1.A1_at--843--10372Chr09:20315353..20315428 (25 bp)
TTTTCCTTTCTTGTAGTGGGCCTAG
NONE
Os.26853.1.A1_at--405--7471Chr02:1734051..1734075 (25 bp)
GTGGGCCTAGGAAACAATCTTGTAT
LOC_Os02g04010
Target Sequence 
GAGCATCCAGCTCCTATTGATAAATCTGACACTAAGTCCTGGATCAGGAAGCGACATGGAAGAAATGTGATAGTTGTTGA
CACTAAGTCATCATCTTGGAAGAAACAGAAGCTGTGATTTTAGAGAAGTTAGTCATATCTATTTGTAAAGACCCATTGTC
TCGATCTATAGTTTCCCACCAAAACAAAGGTTTCTTAGAATGATGAGATGAAGTATCATCATGAAAGATGATATGGATCG
AGTAACTTAATCTGCTGGCGTACAGCAATTGCTCATAATTTGCCTTGGGAAGACAACAAAGTGATTCAGATTCATATTTC
AATGATAATGTATGCCATTTTTCCCTGTATATATATATGAATAGAGATCAAAAGCGCTAACTGTGAGTAGAATCAGCCAT
GTGGCGCAAAGTTTTGTAATCTGATTTCATGTGTGATAGCATTTNGTTTTTCTTCTAATGTAGCCTAGGAAACATTTTCC
TTTCTTGTAGTGGGCCTAGGAAACAATCTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26853.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis