Browse Element(s) Details


Os.26859.1.S1_at

Description gb:AK070457.1
DB_XREF= gi:32980481
TID=Os.26859.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050C03, full insert sequence.
FL= gb:AK070457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1135411/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein
LOC_Os10g11320OsAffx.18218.1.S1_at11/1110+6048125..6048670expressed protein
LOC_Os10g11330Os.20602.2.S1_x_at11/1110+6049861..6052041hAT family dimerisation domain containing protein
LOC_Os10g11340OsAffx.18219.1.S1_at10/1110+6052816..6055864nitroreductase family protein, putative
LOC_Os10g11354Os.26859.1.S1_at11/1110+6060932..6066946MATE efflux family protein, expressed
LOC_Os10g11370OsAffx.18220.1.S1_x_at11/1110+6069281..6072434Protease inhibitor/seed storage/LTP family protein
LOC_Os10g11384Os.14491.2.S1_x_at2/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11384Os.47463.1.S1_x_at1/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11400NANA10+6084040..6088260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11420NANA10+6090406..6092146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26859.1.S1_at--11--1311Chr10:6062685..6062709 (25 bp)
AGATGATGCCTATTCTTGCTGTGTC
LOC_Os10g11354
Os.26859.1.S1_at--1044--7451Chr10:6062705..6062729 (25 bp)
GTGTCCATCCTGTTCGATGCAATTC
LOC_Os10g11354
Os.26859.1.S1_at--806--6591Chr10:6063070..6063094 (25 bp)
GATTGGTGCTTTCATCAACCTAGGG
LOC_Os10g11354
Os.26859.1.S1_at--661--10411Chr10:6063097..6063121 (25 bp)
TTATTACCTGGCTGGCATACCTGTA
LOC_Os10g11354
Os.26859.1.S1_at--393--311Chr10:6063113..6063137 (25 bp)
ATACCTGTAGCATTCTTTTTCGCCT
LOC_Os10g11354
Os.26859.1.S1_at--642--4451Chr10:6063134..6063158 (25 bp)
GCCTTTGTCTGCCATCTAGGAGGAA
LOC_Os10g11354
Os.26859.1.S1_at--533--391Chr10:6063299..6063323 (25 bp)
ATCACCTTGTGCACCAACTGGGATA
LOC_Os10g11354
Os.26859.1.S1_at--135--7951Chr10:6066613..6066637 (25 bp)
GGATAGAGTTTGCAGTTCTTCACTT
LOC_Os10g11354
Os.26859.1.S1_at--1132--6711Chr10:6066627..6066651 (25 bp)
GTTCTTCACTTCCTAAAGACTTGGC
LOC_Os10g11354
Os.26859.1.S1_at--1112--10791Chr10:6066721..6066745 (25 bp)
TTGTTTTTGGTACCCTTGGCAGAAT
LOC_Os10g11354
Os.26859.1.S1_at--553--7051Chr10:6066800..6066824 (25 bp)
GTAACGCGCAAAAACCTATCAGATC
LOC_Os10g11354
Target Sequence 
AGATGATGCCTATTCTTGCTGTGTCCATCCTGTTCGATGCAATTCAGTGTGTTCTGTCAGGTGTTGTTAGGGGCTGTGGA
CGACAACAGATTGGTGCTTTCATCAACCTAGGGGCTTATTACCTGGCTGGCATACCTGTAGCATTCTTTTTCGCCTTTGT
CTGCCATCTAGGAGGAATGGGGCTATGGTTTGGAATATTGTGCGGATTAGTGGTGCAGATGCTTTTGCTTCTCACCATCA
CCTTGTGCACCAACTGGGATAAAGAAGCACTGAAGGCGAAGGATAGAGTTTGCAGTTCTTCACTTCCTAAAGACTTGGCA
ACATGAGGTTACATCAACAGAAGAGCAAATGCATGCAGTTTTATTGGATGCGAAGTATTACAAATAAATTGTTTTTGGTA
CCCTTGGCAGAATCAATGAATGCCTGAGTTTTGATAGTTTGAGTTAGCTAGCCTAGGTATGATTTTTGTAACGCGCAAAA
ACCTATCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis