Browse Element(s) Details


Os.26869.1.A1_at

Description gb:CB623243
DB_XREF= gi:29618231
DB_XREF=OSIIEa10N10.r
CLONE=OSIIEa10N10
TID=Os.26869.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.26869 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173810.1 (A.thaliana) reverse transcriptase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g301204/11retrotransposon protein, putative, unclassified
LOC_Os04g491202/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30089NANA12+17992527..17993561NA
LOC_Os12g30100Os.24831.2.S1_at3/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30100Os.45977.1.S1_at1/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30110OsAffx.31939.1.S1_at9/1112+18008626..18010392hypothetical protein
LOC_Os12g30120OsAffx.26632.2.S1_at8/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.1.S1_x_at7/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.2.S1_x_at6/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.1.S1_at6/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120Os.26869.1.A1_at4/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30130NANA12+18040003..18041234hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26869.1.A1_at--884--34311Chr07:28977634..28977658 (25 bp)
CAGTTCTCTCTTGGTTTATACCTTC
NONE
Os.26869.1.A1_at--866--103513Chr12:6143059..6143083 (25 bp)
TTTATACCTTCCTACTACCATATCT
NONE
Os.26869.1.A1_at--80--2191Chr12:18014120..18014140 (21 bp)
ACACTTGTAGGAGCTTCTGCCATAT
LOC_Os12g30120
Os.26869.1.A1_at--870--83116Chr12:6143248..6143309 (25 bp)
GGCTCCGATTTTGGGCACAGTTGCA
NONE
Os.26869.1.A1_at--31--9391NONE
TCGTAGGCTTGAGACAGCGGTCATG
NONE
Os.26869.1.A1_at--67--5991NONE
GAGACAGCGGTCATGCAACTCTTTG
NONE
Os.26869.1.A1_at--1004--5671NONE
GACTTAAATAAATGTGCTCTCCTTA
NONE
Os.26869.1.A1_at--963--7711Chr12:6143385..6143409 (25 bp)
ATGTGCTCTCCTTATCTTAGTTTGA
NONE
Os.26869.1.A1_at--921--6411NONE
GATCTTTTATTCTGTTGGGTGTGTT
NONE
Os.26869.1.A1_at--12--31515Chr12:6143434..6143458 (25 bp)
AATTCATTTGAACTACACTCAGTGT
NONE
Os.26869.1.A1_at--181--33316Chr11:7887656..7887680 (25 bp)
CACTCAGTGTTTGGGTGTTACTTTT
NONE
Target Sequence 
CAGTTCTCTCTTGGTTTATACCTTCCTACTACCATATCTAATATGTTTGATGGTTGGCTTTTGGGGTAGACAAGAAGAAG
AGTAAACTCACACTTGTAGGAGCTTCTGCCATATGTTGGGCTCTGTGGTTGACTAGGAATGATATGGTTTTTGACAAATC
ACCATCTATCTCATATATGCAGGTAATTTTCAGGGCAACATATTGGCTCCGATTTTGGGCACAGTTGCAAATGTGTGAAG
ATGATCGAGAGCTTATGAAGGTTGCATGTCGTAGGCTTGAGACAGCGGTCATGCAACTCTTTGCAAATTATGGATGGAGA
TTCACAAATAGACTTAAATAAATGTGCTCTCCTTATCTTAGTTTGATCTTTTATTCTGTTGGGTGTGTTTAATTCATTTG
AACTACACTCAGTGTTTGGGTGTTACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26869.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis