Browse Element(s) Details


OsAffx.31939.1.S1_at

Description tigr:9640.m02909
TID=OsAffx.31939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g301109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30080OsAffx.19893.1.S1_at11/1112+17984533..17987203NB-ARC domain containing protein
LOC_Os12g30089NANA12+17992527..17993561NA
LOC_Os12g30100Os.24831.2.S1_at3/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30100Os.45977.1.S1_at1/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30110OsAffx.31939.1.S1_at9/1112+18008626..18010392hypothetical protein
LOC_Os12g30120OsAffx.26632.2.S1_at8/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.1.S1_x_at7/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.2.S1_x_at6/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.1.S1_at6/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120Os.26869.1.A1_at4/1112+18013920..18019296retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31939.1.S1_at--623--71Chr12:18010337..18010361 (25 bp)
ATTCTAATGGCGCTCTAACTTACTC
LOC_Os12g30110
OsAffx.31939.1.S1_at--640--8471NONE
TGGCGCTCTAACTTACTCAAGGGAA
NONE
OsAffx.31939.1.S1_at--985--5971Chr12:18010022..18010046 (25 bp)
GAGAAACCATTTTTGCTTCTTCAGA
LOC_Os12g30110
OsAffx.31939.1.S1_at--1061--10551Chr12:18009960..18010030 (25 bp)
TTCTTCAGAAGATGACGCCGAAATA
LOC_Os12g30110
OsAffx.31939.1.S1_at--69--7631Chr12:18009928..18009952 (25 bp)
GGGAAATTTAGGTCACTGCCACCAA
LOC_Os12g30110
OsAffx.31939.1.S1_at--1058--2291Chr12:18009905..18009929 (25 bp)
AAATGGTTCTCTGCTCCACCTGGAT
LOC_Os12g30110
OsAffx.31939.1.S1_at--1071--1751NONE
ACCTGGATTCTGTGTCTGGCAAGCG
NONE
OsAffx.31939.1.S1_at--308--7191Chr12:18008758..18008778 (21 bp)
GTCTGGCAAGCGGTGTTCAAATGAG
LOC_Os12g30110
OsAffx.31939.1.S1_at--604--2471Chr12:18008715..18008739 (25 bp)
AACACACTAACACAGATCTTTCTAT
LOC_Os12g30110
OsAffx.31939.1.S1_at--719--103115Chr10:6282673..6282696 (24 bp)
TTTCTATCTGTGACGGCCTCTAACA
NONE
OsAffx.31939.1.S1_at--150--7372Chr11:20768557..20768576 (20 bp)
GTGACGGCCTCTAACAAGCCTAGAA
NONE
Target Sequence 
ATTCTAATGGCGCTCTAACTTACTCAAGGGAAGCTGGAAAGGGGTGCTCAAATGAGAAACCATTTTTGCTTCTTCAGAAG
ATGACGCCGAAATATCAGAATGGGAAATTTAGGTCACTGCCACCAAATGGTTCTCTGCTCCACCTGGATTCTGTGTCTGG
CAAGCGGTGTTCAAATGAGCAATATAAAATAAAATATAACACACTAACACAGATCTTTCTATCTGTGACGGCCTCTAACA
AGCCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis