Browse Element(s) Details


Os.26874.1.S1_at

Description gb:AK099757.1
DB_XREF= gi:32984966
TID=Os.26874.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093D24, full insert sequence.
FL= gb:AK099757.1 gb:AK120639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1147011/11Activating signal cointegrator 1 complex subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11440Os.28148.1.S1_at11/113+5875150..5878645Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os03g11450OsAffx.25057.1.S1_at11/113+5879212..5881407hypothetical protein
LOC_Os03g11460Os.5352.1.S1_at10/113+5886818..5896168expressed protein
LOC_Os03g11470Os.26874.1.S1_at11/113+5899030..5910488Activating signal cointegrator 1 complex subunit 3, putative, expressed
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007131biological_processmeiotic recombination
GO:0010093biological_processspecification of floral organ identity
GO:0016070biological_processRNA metabolism
GO:0051026biological_processchiasma formation
GO:0005634cellular_componentnucleus
GO:0003678molecular_functionDNA helicase activity
GO:0003724molecular_functionRNA helicase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26874.1.S1_at--1157--7911Chr03:5899662..5899686 (25 bp)
GGATTCCTACCTTGGGTTTGATCAG
LOC_Os03g11470
Os.26874.1.S1_at--114--6091Chr03:5899637..5899661 (25 bp)
GAGTACTCACTTGGGCATCTTGCAA
LOC_Os03g11470
Os.26874.1.S1_at--901--3011Chr03:5899578..5899602 (25 bp)
AATGCTCATCTACTGTAGGGCCCAA
LOC_Os03g11470
Os.26874.1.S1_at--839--6411Chr03:5899539..5899563 (25 bp)
GATCTTGCCGTGGTTTAGTTGTTCA
LOC_Os03g11470
Os.26874.1.S1_at--57--4551Chr03:5899496..5899520 (25 bp)
GCCCTTGGGAGCTTACATACAGTAT
LOC_Os03g11470
Os.26874.1.S1_at--1042--2071Chr03:5899482..5899506 (25 bp)
ACATACAGTATGACGGGCCGCGAAT
LOC_Os03g11470
Os.26874.1.S1_at--1031--9491Chr03:5899417..5899441 (25 bp)
TCTCCTTCATCTCATTGTCTATTAC
LOC_Os03g11470
Os.26874.1.S1_at--58--7091Chr03:5899381..5899405 (25 bp)
GTCAATGTTTATTAGCCTCTGGCCT
LOC_Os03g11470
Os.26874.1.S1_at--368--1671Chr03:5899368..5899392 (25 bp)
AGCCTCTGGCCTTAAATTTTGTTAG
LOC_Os03g11470
Os.26874.1.S1_at--72--811Chr03:5899335..5899359 (25 bp)
ATGGGTATTAACCTCAGCCTAGAAT
LOC_Os03g11470
Os.26874.1.S1_at--31--10811Chr03:5899272..5899296 (25 bp)
TTGGCTTTGGCCTGGAAATATTCGT
LOC_Os03g11470
Target Sequence 
GGATTCCTACCTTGGGTTTGATCAGGAGTACTCACTTGGGCATCTTGCAAAGGGTGTGTGATGCTCTTGTTGGCTTACCA
ATGCAATGCTCATCTACTGTAGGGCCCAACACTCAGCAGTGCCGATCTTGCCGTGGTTTAGTTGTTCAGCATATCTTATC
TTAAGAGCCCTTGGGAGCTTACATACAGTATGACGGGCCGCGAATATTATGAAATGAACGGTGGNGGTGGCTCATTCATC
TCATTTCTCCTTCATCTCATTGTCTATTACNAGCCATAACAGTCAATGTTTATTAGCCTCTGGCCTTAAATTTTGTTAGT
ATTAACCATGGGTATTAACCTCAGCCTAGAATTTCACGAATGCTTCATTTGCTTCAACAATGCATGAATTTTGGCTTTGG
CCTGGAAATATTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis