Browse Element(s) Details


Os.26878.1.S1_at

Description gb:AK106614.1
DB_XREF= gi:32991823
TID=Os.26878.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H08, full insert sequence.
FL= gb:AK106614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2068011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20630Os.39942.1.S1_x_at8/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_a_at7/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_x_at3/114+11520117..11523264hypothetical protein
LOC_Os04g20640Os.54774.1.S1_x_at2/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20640Os.54774.1.S1_at2/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20640Os.52447.1.S1_x_at1/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20650OsAffx.13893.1.S1_at11/114+11537502..11537927hypothetical protein
LOC_Os04g20670OsAffx.26082.2.S1_at9/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.26082.1.S1_x_at2/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.26082.1.S1_at2/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.22441.1.S1_at1/114+11540992..11542376hypothetical protein
LOC_Os04g20680Os.26878.1.S1_at11/114+11544611..11549917Calcium binding EGF domain containing protein, expressed
LOC_Os04g20690NANA4+11566542..11567131hypothetical protein
LOC_Os04g20700NANA4+11570026..11572208transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26878.1.S1_at--82--3151Chr04:11545164..11545188 (25 bp)
AATTCGCATGTCTAGCAAGCCAGTG
LOC_Os04g20680
Os.26878.1.S1_at--127--8271Chr04:11545097..11545121 (25 bp)
GGCAGACATACTTCGGCAATTGGCA
LOC_Os04g20680
Os.26878.1.S1_at--989--5191Chr04:11545082..11545106 (25 bp)
GCAATTGGCAGATACGGCGTCACAA
LOC_Os04g20680
Os.26878.1.S1_at--515--8511Chr04:11545049..11545073 (25 bp)
TGGCACACTTCAGGGTATTCGCTCA
LOC_Os04g20680
Os.26878.1.S1_at--258--6871Chr04:11545035..11545059 (25 bp)
GTATTCGCTCACTCAGATTATTGGG
LOC_Os04g20680
Os.26878.1.S1_at--702--1091Chr04:11545003..11545027 (25 bp)
AGTGGTAGCATCTCAGAGCCGTGTT
LOC_Os04g20680
Os.26878.1.S1_at--395--5871Chr04:11544988..11545012 (25 bp)
GAGCCGTGTTATTCTCCTGTTAAAA
LOC_Os04g20680
Os.26878.1.S1_at--481--4851Chr04:11544847..11544871 (25 bp)
GCTACATTTGGCTTCTATGTCGCTC
LOC_Os04g20680
Os.26878.1.S1_at--843--5951Chr04:11544797..11544821 (25 bp)
GAGAACGTACCAATTCCCATGATAG
LOC_Os04g20680
Os.26878.1.S1_at--721--2471Chr04:11544713..11544737 (25 bp)
AACACTTTGCTGACTGTACATGCTA
LOC_Os04g20680
Os.26878.1.S1_at--462--8711Chr04:11544642..11544666 (25 bp)
TGTCCGGACCTATTTTCTATGCTTA
LOC_Os04g20680
Target Sequence 
AATTCGCATGTCTAGCAAGCCAGTGCTTAGTTATGGACAGTGAGAACAGGCCAGCAATGAGCCATGTGGCAGACATACTT
CGGCAATTGGCAGATACGGCGTCACAACANCACACTGGCACACTTCAGGGTATTCGCTCACTCAGATTATTGGGAAACTC
AAGTGGTAGCATCTCAGAGCCGTGTTATTCTCCTGTTAAAACAATGGAGTATGACAGCAGGAAGACATCTATGGGCATTG
AATTTGCAAGATAAGGGCATCTGCCATGTATAAGCATTAAACTTAGTTGCACAAGCCTATAGAAAGTTTTTGTCTGAGCT
ACATTTGGCTTCTATGTCGCTCTGAGATTGTTCAACATGGAAGGAATGAGAACGTACCAATTCCCATGATAGCGTANNAT
GGTGATCCGAACATGTAAAGGTGGTAAAACATGCTTTGGCATGGAATTGTCAACACTTTGCTGACTGTACATGCTATGGT
CCAAAACNGAAAAATTCCGATTCATTTGTGCTAAAACAGATATGTCCGGACCTATTTTCTATGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis