Browse Element(s) Details


OsAffx.13893.1.S1_at

Description tigr:9632.m01890
TID=OsAffx.13893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2065011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20620OsAffx.19542.3.S1_x_at7/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.21754.1.S1_x_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.9949.1.S1_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20630Os.39942.1.S1_x_at8/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_a_at7/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_x_at3/114+11520117..11523264hypothetical protein
LOC_Os04g20640Os.54774.1.S1_x_at2/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20640Os.54774.1.S1_at2/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20640Os.52447.1.S1_x_at1/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20650OsAffx.13893.1.S1_at11/114+11537502..11537927hypothetical protein
LOC_Os04g20670OsAffx.26082.2.S1_at9/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.26082.1.S1_x_at2/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.26082.1.S1_at2/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.22441.1.S1_at1/114+11540992..11542376hypothetical protein
LOC_Os04g20680Os.26878.1.S1_at11/114+11544611..11549917Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13893.1.S1_at--461--3911Chr04:11537861..11537885 (25 bp)
CTGGAGCAGCAGATGTTGGACCTAG
LOC_Os04g20650
OsAffx.13893.1.S1_at--1150--8071Chr04:11537835..11537859 (25 bp)
GGACCACCTGGAGCCAATTCGGGAT
LOC_Os04g20650
OsAffx.13893.1.S1_at--756--10611Chr04:11537818..11537842 (25 bp)
TTCGGGATGCCGTCCACAAGAACTT
LOC_Os04g20650
OsAffx.13893.1.S1_at--1110--2211Chr04:11537803..11537827 (25 bp)
ACAAGAACTTCACTCTCCTTCATCA
LOC_Os04g20650
OsAffx.13893.1.S1_at--651--7611Chr04:11537770..11537794 (25 bp)
GGGAACTCGGCATCGAAGCCGACAT
LOC_Os04g20650
OsAffx.13893.1.S1_at--828--5651Chr04:11537750..11537774 (25 bp)
GACATCCCAAAACACTCCGACGAGA
LOC_Os04g20650
OsAffx.13893.1.S1_at--696--1391Chr04:11537728..11537752 (25 bp)
AGACGATGCTGGTGTCTTCTCTGTA
LOC_Os04g20650
OsAffx.13893.1.S1_at--114--7151Chr04:11537715..11537739 (25 bp)
GTCTTCTCTGTATGACCTCATCAAG
LOC_Os04g20650
OsAffx.13893.1.S1_at--1132--5951Chr04:11537684..11537708 (25 bp)
GAGAAGATCCCTGGGAAGCACGCCG
LOC_Os04g20650
OsAffx.13893.1.S1_at--752--751Chr04:11537616..11537640 (25 bp)
ATGTCACATTCTTGCCTGCGTCAAG
LOC_Os04g20650
OsAffx.13893.1.S1_at--195--9731Chr04:11537596..11537620 (25 bp)
TCAAGCTTGCCTACCCTAATATCGA
LOC_Os04g20650
Target Sequence 
CTGGAGCAGCAGATGTTGGACCTAGGGGACCACCTGGAGCCAATTCGGGATGCCGTCCACAAGAACTTCACTCTCCTTCA
TCATCTCGCGGGGGAACTCGGCATCGAAGCCGACATCCCAAAACACTCCGACGAGACGATGCTGGTGTCTTCTCTGTATG
ACCTCATCAAGGCGATGGAGAAGATCCCTGGGAAGCACGCCGCCAAGGTGGCCGAGGACACCTGCACCGGACTGCGCACA
GGCGCATGTCACATTCTTGCCTGCGTCAAGCTTGCCTACCCTAATATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis