Browse Element(s) Details


OsAffx.22441.1.S1_at

Description gb:NM_186632.1
DB_XREF= gi:34900349
GEN=OJ1118_B03.5
TID=OsAffx.22441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1118_B03.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g206701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20620OsAffx.19542.3.S1_x_at7/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.21754.1.S1_x_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20620OsAffx.9949.1.S1_at1/114+11513697..11519353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20630Os.39942.1.S1_x_at8/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_a_at7/114+11520117..11523264hypothetical protein
LOC_Os04g20630Os.39942.2.S1_x_at3/114+11520117..11523264hypothetical protein
LOC_Os04g20640Os.54774.1.S1_x_at2/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20640Os.54774.1.S1_at2/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20640Os.52447.1.S1_x_at1/114+11526822..11533311retrotransposon, putative, centromere-specific
LOC_Os04g20650OsAffx.13893.1.S1_at11/114+11537502..11537927hypothetical protein
LOC_Os04g20670OsAffx.26082.2.S1_at9/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.26082.1.S1_x_at2/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.26082.1.S1_at2/114+11540992..11542376hypothetical protein
LOC_Os04g20670OsAffx.22441.1.S1_at1/114+11540992..11542376hypothetical protein
LOC_Os04g20680Os.26878.1.S1_at11/114+11544611..11549917Calcium binding EGF domain containing protein, expressed
LOC_Os04g20690NANA4+11566542..11567131hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22441.1.S1_at--447--911Chr07:6826966..6826990 (25 bp)
AGGCTGCAGGCGCTCTTGATGGTGA
NONE
OsAffx.22441.1.S1_at--416--4571Chr07:6826957..6826981 (25 bp)
GCGCTCTTGATGGTGAGGCAAGTAT
NONE
OsAffx.22441.1.S1_at--277--9591Chr07:6826953..6826977 (25 bp)
TCTTGATGGTGAGGCAAGTATCGCG
NONE
OsAffx.22441.1.S1_at--559--4351Chr07:6826925..6826949 (25 bp)
CCAGCGACGACTGGAGAATGCGCGT
NONE
OsAffx.22441.1.S1_at--16--8551Chr07:6826901..6826925 (25 bp)
TGGATGGCCACGAGGAGCTGCGCCG
NONE
OsAffx.22441.1.S1_at--647--5091Chr07:6826674..6826901 (25 bp)
GCACTCACAGCTCTGGTCCAAAGGT
NONE
OsAffx.22441.1.S1_at--375--3311Chr07:6826669..6826896 (25 bp)
CACAGCTCTGGTCCAAAGGTTGGTA
NONE
OsAffx.22441.1.S1_at--428--4792Chr02:2495725..2495744 (20 bp)
GCTCTGGTCCAAAGGTTGGTAAGAT
NONE
OsAffx.22441.1.S1_at--559--4278Chr11:8654719..8654742 (24 bp)
CCTGCAACTGATAAGATATACAAAC
NONE
OsAffx.22441.1.S1_at--734--2197Chr09:11520476..11520500 (25 bp)
ACAAACAGCAGATCAATAAGCCGAT
NONE
OsAffx.22441.1.S1_at--215--6436Chr11:8338172..8338192 (21 bp)
GATCAATAAGCCGATCGGCTGTCAA
NONE
Target Sequence 
AGGCTGCAGGCGCTCTTGATGGTGAGGCAAGTATCGCGGGGCCAGCGACGACTGGAGAATGCGCGTGGATGGCCACGAGG
AGCTGCGCCGCACTCACAGCTCTGGTCCAAAGGTTGGTAAGATGCGGGCGTGCCAGTCAGTTTGATCCTGCAACTGATAA
GATATACAAACAGCAGATCAATAAGCCGATCGGCTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis