Browse Element(s) Details


Os.26886.4.S1_at

Description gb:NM_194728.1
DB_XREF= gi:37530815
TID=Os.26886.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26886 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retrotransposable elements TNP2 (OSJNAb0072F04.19), mRNA.
PROD=putative retrotransposable elements TNP2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0414010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein
LOC_Os10g04180Os.18720.1.S1_at10/1110+1933447..1936961NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26886.4.S1_at--681--9458Chr11:9467009..9467033 (25 bp)
TCTGATTATCCTGACCTTGACTTTG
NONE
Os.26886.4.S1_at--222--3632Chr11:9467024..9467048 (25 bp)
CTTGACTTTGGATGCTTCCTTCGCA
NONE
Os.26886.4.S1_at--927--10672Chr11:9467039..9467059 (21 bp)
TTCCTTCGCATTGTCAACAGCTTGA
NONE
Os.26886.4.S1_at--941--2891NONE
AAGGTTGCAACATCGGCTGGAATAG
NONE
Os.26886.4.S1_at--245--8271Chr10:1906620..1906644 (25 bp)
GGCATGGAGGCAGAGACCCCTACTT
LOC_Os10g04140
Os.26886.4.S1_at--1010--971Chr10:1904754..1904778 (25 bp)
AGGAGGTGTCGCTTTTGGCCAAGCT
LOC_Os10g04140
Os.26886.4.S1_at--654--8451Chr10:1904739..1904763 (25 bp)
TGGCCAAGCTGGGTGTTTACTCAGT
LOC_Os10g04140
Os.26886.4.S1_at--642--1011Chr10:1904712..1904736 (25 bp)
AGGTTGAGCAGCCTTCAGCGTCGTT
LOC_Os10g04140
Os.26886.4.S1_at--285--9671Chr10:1904698..1904722 (25 bp)
TCAGCGTCGTTGGTGCTTTCTCAAG
LOC_Os10g04140
Os.26886.4.S1_at--1024--10311Chr10:1904682..1904706 (25 bp)
TTTCTCAAGGCCGACCACAATCAGG
LOC_Os10g04140
Os.26886.4.S1_at--381--411Chr10:1904663..1904687 (25 bp)
ATCAGGTGCCCTGTGTTCACGGTGG
LOC_Os10g04140
Target Sequence 
TCTGATTATCCTGACCTTGACTTTGGATGCTTCCTTCGCATTGTCAACAGCTTGAACCATGTCATTGGTAAAAGAAAAGG
TTGCAACATCGGCTGGAATAGTGGCGTACGGCGGGAGAAAGGGCAGCGACGGCGGCGGCACCGGCTCGGCAGGGGTGGGA
GGGGCAGCGACGCCCTCCCCTCCGCCAGATCTGGCGGGAGGGGAGGCGCGGTGGCCGTGGACGGCATGGAGGCAGAGACC
CCTACTTCCCGGATGCGACAGCCCCTACTTCCCGGTGGTCCGACTGTGGGAGGGGAGGCGGTGGTAGCCCGGCGGCGGAG
TATCCTCGGGGCAATGGTGGCAGCGGTGGCGGGTCTGGTAGATGGCGATGATCCCGATCGCGGGAAGCCCAATGGTAAGG
AGGTGTCGCTTTTGGCCAAGCTGGGTGTTTACTCAGTGAAGGTTGAGCAGCCTTCAGCGTCGTTGGTGCTTTCTCAAGGC
CGACCACAATCAGGTGCCCTGTGTTCACGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26886.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis