Browse Element(s) Details


Os.2689.1.S1_a_at

Description gb:AK062401.1
DB_XREF= gi:32972419
TID=Os.2689.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2689 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for cdc2+CDC28-related protein kinase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E03, full insert sequence.
FL= gb:AK062401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3260011/11CDC2+/CDC28-related protein kinase R2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein
LOC_Os05g32580Os.24657.1.S1_at11/115+18988309..18995082expressed protein
LOC_Os05g32590Os.51750.1.S1_at11/115+18997886..18999918expressed protein
LOC_Os05g32600Os.2689.1.S1_a_at11/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32600Os.12361.1.S1_at1/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32610Os.35247.1.S1_at11/115+19010370..19016056Helicase conserved C-terminal domain containing protein, expressed
LOC_Os05g32620OsAffx.14923.1.S1_at11/115+19021547..19021816hypothetical protein
LOC_Os05g32630Os.5476.1.S1_at11/115+19025544..19029642Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000079biological_processregulation of cyclin dependent protein kinase activity
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0016572biological_processhistone phosphorylation
GO:0030154biological_processcell differentiation
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2689.1.S1_a_at--871--2511Chr05:19006291..19006315 (25 bp)
AACTTCACTGAAGGGCGCTGACAGG
LOC_Os05g32600
Os.2689.1.S1_a_at--404--1691Chr05:19006323..19006347 (25 bp)
AGCCAACTATGCTGTTATCGTTTTT
LOC_Os05g32600
Os.2689.1.S1_a_at--672--6771Chr05:19006392..19006416 (25 bp)
GTTACGATGCTAATTTACACCAGGA
LOC_Os05g32600
Os.2689.1.S1_a_at--1140--1711Chr05:19006410..19006434 (25 bp)
ACCAGGACGTGCACATGCCATTTCA
LOC_Os05g32600
Os.2689.1.S1_a_at--421--9531Chr05:19006538..19006562 (25 bp)
TCTCAAGTTCTTTCTGGTGTCAATT
LOC_Os05g32600
Os.2689.1.S1_a_at--335--171Chr05:19006560..19006584 (25 bp)
ATTTTCGTTCACTTCTTGTATGGAC
LOC_Os05g32600
Os.2689.1.S1_a_at--1058--6611Chr05:19006599..19006623 (25 bp)
GTTGTTTAGTCGGTCATCTTATTCT
LOC_Os05g32600
Os.2689.1.S1_a_at--605--3151Chr05:19006634..19006658 (25 bp)
AATTCTTGTAACCAGGAGCGGCTTA
LOC_Os05g32600
Os.2689.1.S1_a_at--177--8091Chr05:19006648..19006672 (25 bp)
GGAGCGGCTTATATTACCTGAGTAT
LOC_Os05g32600
Os.2689.1.S1_a_at--464--1771Chr05:19006663..19006687 (25 bp)
ACCTGAGTATTCTGACACGTCTTCC
LOC_Os05g32600
Os.2689.1.S1_a_at--910--7131Chr05:19006681..19006705 (25 bp)
GTCTTCCTGCAATACGCTGTAACAA
LOC_Os05g32600
Target Sequence 
AACTTCACTGAAGGGCGCTGACAGGATGGCACAGCCAACTATGCTGTTATCGTTTTTGACTACCAAAGCCGGCTCAGGAA
GAGGAAACTGAAGAGTTACGTGTTACGATGCTAATTTACACCAGGACGTGCACATGCCATTTCANTTTGGCTGGCATACA
TAAATCTGTAATCTTTATTGCATAGATGAGTTTGCTTGTGTGAGCATGTTTCTTNCCAGTGTTCGCAAAGATTATTATGA
AGTTTATGTCTCAAGTTCTTTCTGGTGTCAATTTTCGTTCACTTCTTGTATGGACATTGAATTTTGATTGTTGTTTAGTC
GGTCATCTTATTCTTAGGTACAGTAATTCTTGTAACCAGGAGCGGCTTATATTACCTGAGTATTCTGACACGTCTTCCTG
CAATACGCTGTAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2689.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis