Browse Element(s) Details


Os.26931.1.S1_a_at

Description gb:AK071487.1
DB_XREF= gi:32981510
TID=Os.26931.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099F01, full insert sequence.
FL= gb:AK071487.1 gb:AK059065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1397011/11UOS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13950Os.50488.1.S1_at11/112+7594952..7599868NHL repeat-containing protein, putative, expressed
LOC_Os02g13960Os.5133.1.S1_at11/112+7613140..7615367U-box domain containing protein, expressed
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed
LOC_Os02g14000Os.10246.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14000OsAffx.2605.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14010OsAffx.24239.1.S1_at10/112+7648303..7649327hypothetical protein
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26931.1.S1_a_at--364--5911Chr02:7626603..7626627 (25 bp)
GAGCTCAAAGCTGGCATAACAGGTA
LOC_Os02g13970
Os.26931.1.S1_a_at--18--5311Chr02:7626639..7626663 (25 bp)
GAAGGAACACCTGCTCAGGTCTGAA
LOC_Os02g13970
Os.26931.1.S1_a_at--105--5491Chr02:7626664..7626688 (25 bp)
GAACATGTTAAATGCAGAACGCCCA
LOC_Os02g13970
Os.26931.1.S1_a_at--427--2611Chr02:7626681..7626705 (25 bp)
AACGCCCAACTGCTTTGACAAATCT
LOC_Os02g13970
Os.26931.1.S1_a_at--142--9271Chr02:7626989..7627013 (25 bp)
TCCTCTGGAGTTTGTGTTATATTTA
LOC_Os02g13970
Os.26931.1.S1_a_at--95--191Chr02:7627009..7627033 (25 bp)
ATTTAATCTGCTGTATCTGTATGAG
LOC_Os02g13970
Os.26931.1.S1_a_at--988--6251Chr02:7627065..7627089 (25 bp)
GATGTCGATCAAGAGCTCAAAGGTT
LOC_Os02g13970
Os.26931.1.S1_a_at--1096--4931Chr02:7627095..7627119 (25 bp)
GCATTGGAGCTCTTTCTGTAGCAGA
LOC_Os02g13970
Os.26931.1.S1_a_at--631--8811Chr02:7627132..7627156 (25 bp)
TGTTGCTTTTATTTTCACTGAATTG
LOC_Os02g13970
Os.26931.1.S1_a_at--701--3171Chr02:7627152..7627176 (25 bp)
AATTGTGTGCTGTAGATAGCGTCAT
LOC_Os02g13970
Os.26931.1.S1_a_at--488--8211Chr02:7627178..7627202 (25 bp)
GGAATCTAGATCGACCATTTTGTAA
LOC_Os02g13970
Target Sequence 
GAGCTCAAAGCTGGCATAACAGGTAAAGAGGCACTAGAAGGAACACCTGCTCAGGTCTGAAGAACATGTTAAATGCAGAA
CGCCCAACTGCTTTGACAAATCTTGACATGGTGCTTCTTGAACATGAACAGAATTACATAAATATGCAAGTCTGATTCAT
AAACCACCAATAGTTGCAGTACCTGAGCATATGTGCCACACTTAATCTTTGCAGTCATGTGGTTTCCAAAATACCAAATG
GGAAGTACTTTGTGAAGTATGTGAAGGAACAGTTGTTTCTTTTTTTTATGTAAAGTAGTATATCCTCTGGAGTTTGTGTT
ATATTTAATCTGCTGTATCTGTATGAGAAGATATGCATACATCTTCAGAAGACATATGGATGTCGATCAAGAGCTCAAAG
GTTATGGAGCATTGGAGCTCTTTCTGTAGCAGATTCTGTATATTATGTTGCTTTTATTTTCACTGAATTGTGTGCTGTAG
ATAGCGTCATTGGAATCTAGATCGACCATTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26931.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis