Browse Element(s) Details


Os.26943.1.S1_at

Description gb:AK106533.1
DB_XREF= gi:32991742
TID=Os.26943.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.26943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A11, full insert sequence.
FL= gb:AK073291.1 gb:AK102346.1 gb:AK073281.1 gb:AK106533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3284011/11Metallophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32780OsAffx.13097.1.S1_s_at11/119+19555014..19559518Transposable element protein, putative, MuDR
LOC_Os09g32790NANA9+19560082..19560342hypothetical protein
LOC_Os09g32800Os.3736.1.S1_at11/119+19561865..19565427Proteasome subunit beta type 1, putative, expressed
LOC_Os09g32810Os.8665.1.S1_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32810Os.8665.1.S1_s_at11/119+19565734..19568514Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative, expressed
LOC_Os09g32820Os.18062.1.S1_at11/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32820Os.53404.1.S1_at1/119+19569628..19575197uridine kinase family protein, expressed
LOC_Os09g32830NANA9+19576951..19580595Purple acid phosphatase, putative
LOC_Os09g32840Os.26943.1.S1_at11/119+19581079..19585800Metallophosphatase, putative, expressed
LOC_Os09g32850NANA9+19586671..19587460hypothetical protein
LOC_Os09g32860NANA9+19589136..19592181F-box domain containing protein, expressed
LOC_Os09g32870Os.27165.1.A1_at11/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32870OsAffx.27735.1.S1_at1/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32880NANA9+19598725..19600526hypothetical protein
LOC_Os09g32890NANA9+19608976..19609476hypothetical protein
LOC_Os09g32899NANA9+19610344..19611198NA

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26943.1.S1_at--891--1931Chr09:19581624..19581648 (25 bp)
ACGGCAAGGCAGAGCCTCCAGAGGC
LOC_Os09g32840
Os.26943.1.S1_at--1019--1371Chr09:19581614..19581638 (25 bp)
AGAGCCTCCAGAGGCTATGGCAGCG
LOC_Os09g32840
Os.26943.1.S1_at--140--9691Chr09:19581365..19581389 (25 bp)
TCACGGCGTTCAACTACACGTCGCT
LOC_Os09g32840
Os.26943.1.S1_at--1109--9051Chr09:19581341..19581365 (25 bp)
TGCTCTACGAGTACAGGCGGTCCAG
LOC_Os09g32840
Os.26943.1.S1_at--1056--5751Chr09:19581220..19581244 (25 bp)
GACGTGATCCAGCTCCGGTGATTCC
LOC_Os09g32840
Os.26943.1.S1_at--702--1591Chr09:19581210..19581234 (25 bp)
AGCTCCGGTGATTCCGCCGGCGAGT
LOC_Os09g32840
Os.26943.1.S1_at--40--8391Chr09:19581180..19581204 (25 bp)
GGCGACGTGTGCACTATTGCTGCTT
LOC_Os09g32840
Os.26943.1.S1_at--998--5751Chr09:19581177..19581201 (25 bp)
GACGTGTGCACTATTGCTGCTTGGT
LOC_Os09g32840
Os.26943.1.S1_at--109--7331Chr09:19581151..19581175 (25 bp)
GTGCTTGCGGGCCTCGTCTGTAATC
LOC_Os09g32840
Os.26943.1.S1_at--204--8431Chr09:19581142..19581166 (25 bp)
GGCCTCGTCTGTAATCTTGACTTGT
LOC_Os09g32840
Os.26943.1.S1_at--352--3631Chr09:19581127..19581151 (25 bp)
CTTGACTTGTCAATCGTGTGTAAAT
LOC_Os09g32840
Target Sequence 
ACGGCAAGGCAGAGCCTCCAGAGGCTATGGCAGCGGCACCGCGTCGACCTCNCCTTCTACGGCCACGTCCACAACTACGA
GCGGACGTGCCCGGTCTACGACGGGCGGTGCGCGTCGCCGGAGAGGTCGCGCTACTCCGGCGCGGTGGGCGGCACCATCC
ACGCGGTGGTCGGCGGCGGCGGCAGCCACNTGAGCAACTTCACCGCCGAGGCGCCNCCGTGGAGCGTGTACAGGGAGATG
GACTACGGCTTCGTCAAGCTCACGGCGTTCAACTACACGTCGCTGCTCTACGAGTACAGGCGGTCCAGCGACGGCGAGGT
GCACGACAGCTTCACCGTCCACCGGGANTACCGCGACGTGCTCGCCTGCGTCGCCGACAGCTGCCCGCCGACCATCCCGC
CGGCGACGTGATCCAGCTCCGGTGATTCCGCCGGCGAGTCTGCCGGCGACGTGTGCACTATTGCTGCTTGGTGGTGCTTG
CGGGCCTCGTCTGTAATCTTGACTTGTCAATCGTGTGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis