Browse Element(s) Details


OsAffx.27735.1.S1_at

Description tigr:9634.m01995
TID=OsAffx.27735.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2048010/11hypothetical protein
LOC_Os09g328701/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20430Os.7081.1.S1_at11/116+11736127..11740014LBP/BPI / CETP family, N-terminal domain containing protein, expressed
LOC_Os06g20440NANA6+11741657..11745430transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g20450OsAffx.27736.1.S1_at11/116+11746557..11746873hypothetical protein
LOC_Os06g20460OsAffx.14902.1.A1_at1/116+11748072..11749772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g20470NANA6+11751948..11752271hypothetical protein
LOC_Os06g20480OsAffx.27735.1.S1_x_at10/116+11760261..11761473hypothetical protein
LOC_Os06g20480OsAffx.27735.1.S1_at10/116+11760261..11761473hypothetical protein
LOC_Os06g20490OsAffx.29169.1.S1_at10/116+11774852..11776776retrotransposon protein, putative, LINE subclass
LOC_Os06g20490OsAffx.29169.3.S1_at4/116+11774852..11776776retrotransposon protein, putative, LINE subclass
LOC_Os06g20500Os.8207.1.S1_at11/116+11780839..11786800expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27735.1.S1_at--77--3193Chr06:11810140..11810164 (25 bp)
CAATTTGGACGACTACTCTATCTTC
NONE
OsAffx.27735.1.S1_at--725--8491NONE
TGGACGACTACTCTATCTTCCAGTT
NONE
OsAffx.27735.1.S1_at--102--3732Chr06:11810152..11810438 (25 bp)
CTACTCTATCTTCCAGTTCCAAGAA
NONE
OsAffx.27735.1.S1_at--503--9212Chr06:11810428..11810449 (22 bp)
TCCAGTTCCAAGAAATAGGGCAATT
NONE
OsAffx.27735.1.S1_at--779--1072Chr06:11810441..11810465 (25 bp)
AGGGCAATTTATAGCCCCCTATCAC
NONE
OsAffx.27735.1.S1_at--387--4212Chr06:11810456..11810480 (25 bp)
CCCCTATCACCAAGGCCATTTCTTT
NONE
OsAffx.27735.1.S1_at--1127--1613Chr06:11810808..11810832 (25 bp)
AGCGGACGACAAAGCCTTGCCTCGC
NONE
OsAffx.27735.1.S1_at--553--5794Chr09:19593868..19593902 (25 bp)
GACGACAAAGCCTTGCCTCGCTGCT
LOC_Os09g32870
OsAffx.27735.1.S1_at--281--4534Chr06:11810857..11810881 (25 bp)
GCCGCCACCCCGTTGGTGAAGAGGC
NONE
OsAffx.27735.1.S1_at--878--5733Chr06:11811018..11811042 (25 bp)
GACGGCGAGGGCCAAGCGGTCGGCA
NONE
OsAffx.27735.1.S1_at--849--3774Chr06:11811045..11811069 (25 bp)
CTCGGCGAGGTCTTGACGGCCACCT
NONE
Target Sequence 
CAATTTGGACGACTACTCTATCTTCCAGTTCCAAGAAATAGGGCAATTTATAGCCCCCTATCACCAAGGCCATTTCTTTT
GGAGGAGGACGACGAGCGGACGACAAAGCCTTGCCTCGCTGCTCGCCGCTACCGCGCCCGACTGCCGCCACCCCGTTGGT
GAAGAGGCGGCGCTGGCGGTTGCGGACGGTGACGGCGCGGCCCTCGGCGAGGACGTGGGGGAGGTAGGCGTTCTCGACAA
GTGCGTGGTGGCGGTGGTGGAAGGTGGCGCCGCGGAAGTCGTCGGCGACAACCTCGTGGTCGTCGACGGCGAGGGCCAAG
CGGTCGGCACCCTCGGCGAGGTCTTGACGGCCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis