Browse Element(s) Details


Os.7081.1.S1_at

Description gb:AK103132.1
DB_XREF= gi:32988341
TID=Os.7081.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120D02, full insert sequence.
FL= gb:AK103132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2043011/11LBP/BPI / CETP family, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20390Os.5637.1.S1_at10/116+11711593..11716063expressed protein
LOC_Os06g20400Os.18614.1.S1_at11/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400OsAffx.15517.1.S1_s_at11/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400OsAffx.15517.1.S1_at10/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410Os.24334.1.A1_at11/116+11724807..11733595BAH domain containing protein, expressed
LOC_Os06g20420OsAffx.27734.1.S1_at11/116+11733894..11734334hypothetical protein
LOC_Os06g20430Os.7081.1.S1_at11/116+11736127..11740014LBP/BPI / CETP family, N-terminal domain containing protein, expressed
LOC_Os06g20440NANA6+11741657..11745430transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g20450OsAffx.27736.1.S1_at11/116+11746557..11746873hypothetical protein
LOC_Os06g20460OsAffx.14902.1.A1_at1/116+11748072..11749772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g20470NANA6+11751948..11752271hypothetical protein
LOC_Os06g20480OsAffx.27735.1.S1_x_at10/116+11760261..11761473hypothetical protein
LOC_Os06g20480OsAffx.27735.1.S1_at10/116+11760261..11761473hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7081.1.S1_at--1047--1231Chr06:11737416..11737437 (22 bp)
AGTTGCATGCATCTCTGTAGTAGTA
LOC_Os06g20430
Os.7081.1.S1_at--979--10051Chr06:11736839..11736863 (25 bp)
TAGTAAGTGCCTCAGGTGTCGCAGA
LOC_Os06g20430
Os.7081.1.S1_at--453--3111Chr06:11736774..11736798 (25 bp)
AATTTCTCCCTTGCCTTGAAGTGGA
LOC_Os06g20430
Os.7081.1.S1_at--939--10271Chr06:11736453..11736477 (25 bp)
TTTGCATGCCCTATTTGAACTCACG
LOC_Os06g20430
Os.7081.1.S1_at--406--8031Chr06:11736418..11736442 (25 bp)
GGAGTTATCTTACCTGTGGTCCATG
LOC_Os06g20430
Os.7081.1.S1_at--102--8611Chr06:11736402..11736426 (25 bp)
TGGTCCATGGTTTCACACTCAAAGA
LOC_Os06g20430
Os.7081.1.S1_at--500--451Chr06:11736376..11736400 (25 bp)
ATCTACGTTCTTACTTCTCCTGAGA
LOC_Os06g20430
Os.7081.1.S1_at--564--5631Chr06:11736347..11736371 (25 bp)
GACACTTTGTTCTGATGTTGCCTTC
LOC_Os06g20430
Os.7081.1.S1_at--151--1511Chr06:11736313..11736337 (25 bp)
AGCAGCCTGGCAACTTTACCAATTT
LOC_Os06g20430
Os.7081.1.S1_at--830--10451Chr06:11736298..11736322 (25 bp)
TTACCAATTTTGAGATCCCCTCGGG
LOC_Os06g20430
Os.7081.1.S1_at--477--8671Chr06:11736259..11736283 (25 bp)
TGTGTACCTCACGTTTGGGCCAAAA
LOC_Os06g20430
Target Sequence 
AGTTGCATGCATCTCTGTAGTAGTAAGTGCCTCAGGTGTCGCAGAGGCAGCAGGCAATAAAGTATATGGTAAGGTTGAAT
TGGGCAATTTCTCCCTTGCCTTGAAGTGGAGCAAAATTGGTAACTTCCACATGTCATTGATTCAGGGAGTGATTCGTGTT
TTCTTGAACACGGTTTGCATGCCCTATTTGAACTCACGGCTGGGGCATGGAGTTATCTTACCTGTGGTCCATGGTTTCAC
ACTCAAAGACATCTACGTTCTTACTTCTCCTGAGAAGTTGACACTTTGTTCTGATGTTGCCTTCGCTAATGCAAGCAGCC
TGGCAACTTTACCAATTTTGAGATCCCCTCGGGTTTTATAGGGTATATGTGTACCTCACGTTTGGGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis