Browse Element(s) Details


OsAffx.27734.1.S1_at

Description tigr:9634.m01989
TID=OsAffx.27734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2042011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20390Os.5637.1.S1_at10/116+11711593..11716063expressed protein
LOC_Os06g20400Os.18614.1.S1_at11/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400OsAffx.15517.1.S1_s_at11/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400OsAffx.15517.1.S1_at10/116+11718035..11721859DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410Os.24334.1.A1_at11/116+11724807..11733595BAH domain containing protein, expressed
LOC_Os06g20420OsAffx.27734.1.S1_at11/116+11733894..11734334hypothetical protein
LOC_Os06g20430Os.7081.1.S1_at11/116+11736127..11740014LBP/BPI / CETP family, N-terminal domain containing protein, expressed
LOC_Os06g20440NANA6+11741657..11745430transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g20450OsAffx.27736.1.S1_at11/116+11746557..11746873hypothetical protein
LOC_Os06g20460OsAffx.14902.1.A1_at1/116+11748072..11749772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g20470NANA6+11751948..11752271hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27734.1.S1_at--286--231Chr06:11733924..11733948 (25 bp)
ATATTAATTAGCCGCGCGCGTCTTC
LOC_Os06g20420
OsAffx.27734.1.S1_at--667--9411Chr06:11734108..11734132 (25 bp)
TCGTCGCCGTGTGCAGCCAGTGGCA
LOC_Os06g20420
OsAffx.27734.1.S1_at--256--7471Chr06:11734116..11734140 (25 bp)
GTGTGCAGCCAGTGGCACCTTGGCA
LOC_Os06g20420
OsAffx.27734.1.S1_at--883--8251Chr06:11734129..11734153 (25 bp)
GGCACCTTGGCACGCTTTGGCAGCA
LOC_Os06g20420
OsAffx.27734.1.S1_at--388--10871Chr06:11734135..11734159 (25 bp)
TTGGCACGCTTTGGCAGCATCTGCT
LOC_Os06g20420
OsAffx.27734.1.S1_at--712--9171Chr06:11734174..11734198 (25 bp)
TGCCGTGGCTGCTCAACCTGATGCA
LOC_Os06g20420
OsAffx.27734.1.S1_at--396--8351Chr06:11734227..11734251 (25 bp)
GGCGTGGTGCACCAAATCCCCAGGA
LOC_Os06g20420
OsAffx.27734.1.S1_at--60--2271Chr06:11734240..11734264 (25 bp)
AAATCCCCAGGAGAGCACGCACGTG
LOC_Os06g20420
OsAffx.27734.1.S1_at--237--1511Chr06:11734253..11734277 (25 bp)
AGCACGCACGTGCTCTGGTGTCTCT
LOC_Os06g20420
OsAffx.27734.1.S1_at--456--7751Chr06:11734269..11734293 (25 bp)
GGTGTCTCTTCCTACGACAATGGAT
LOC_Os06g20420
OsAffx.27734.1.S1_at--957--10631Chr06:11734277..11734301 (25 bp)
TTCCTACGACAATGGATGGCTCATG
LOC_Os06g20420
Target Sequence 
ATATTAATTAGCCGCGCGCGTCTTCCTCTCGTGCCACCGTGGGGATCTGTTTCAGCAGAAGCAGCAGTCCGCCACAGCCG
CTGCCGCCACCGCCGCTGCCGAGCCACCTCCAGGCTGGTCGAACCTCCTGACAGACCTCGCCAGATCGTCTCCTCGTTGC
TGTCCCACCATGACCGCCTCAGCTTCGTCGCCGTGTGCAGCCAGTGGCACCTTGGCACGCTTTGGCAGCATCTGCTGCTG
CCGCTGCCGTTGCCGTGGCTGCTCAACCTGATGCACCCGCGCACCTACCAGAACCTCGCCGCCGGCGTGGTGCACCAAAT
CCCCAGGAGAGCACGCACGTGCTCTGGTGTCTCTTCCTACGACAATGGATGGCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis