Browse Element(s) Details

Os.5637.1.S1_at

Description

gb:AK066935.1
DB_XREF= gi:32976953
TID=Os.5637.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093K12, full insert sequence.
FL= gb:AK066935.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20390	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20340	Os.6777.1.S1_at	10/11	6	+	11683184..11686911	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein
LOC_Os06g20400	Os.18614.1.S1_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_s_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_at	10/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410	Os.24334.1.A1_at	11/11	6	+	11724807..11733595	BAH domain containing protein, expressed
LOC_Os06g20420	OsAffx.27734.1.S1_at	11/11	6	+	11733894..11734334	hypothetical protein
LOC_Os06g20430	Os.7081.1.S1_at	11/11	6	+	11736127..11740014	LBP/BPI / CETP family, N-terminal domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000904	biological_process	cellular morphogenesis during differentiation
GO:0006350	biological_process	transcription
GO:0009826	biological_process	unidimensional cell growth
GO:0005634	cellular_component	nucleus
GO:0009505	cellular_component	cell wall (sensu Magnoliophyta)
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed RNA polymerase activity
GO:0009927	molecular_function	histidine phosphotransfer kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5637.1.S1_at--788--309	1	Chr06:11715476..11715500 (25 bp)	AATACCACCCGAGTGCTGATACTAC	LOC_Os06g20390
Os.5637.1.S1_at--582--649	1	Chr06:11715556..11715580 (25 bp)	GATAGCAGTTACCAGCCAGAAGTTG	LOC_Os06g20390
Os.5637.1.S1_at--862--281	1	Chr06:11715609..11715633 (25 bp)	AAGATTTGCAGTTGGTGCCCTCGCA	LOC_Os06g20390
Os.5637.1.S1_at--804--871	1	Chr06:11715644..11715668 (25 bp)	TGTCGGTCGCTGTTGATCACCTGAA	LOC_Os06g20390
Os.5637.1.S1_at--882--165	1	Chr06:11715668..11715692 (25 bp)	AGCGCGCGCTGGATCTTCTGACGAA	LOC_Os06g20390
Os.5637.1.S1_at--231--555	1	Chr06:11715703..11715727 (25 bp)	GAAACTCATTAGTTCTCTCAGGCTT	LOC_Os06g20390
Os.5637.1.S1_at--745--805	1	Chr06:11715790..11715814 (25 bp)	GGAGATGTTGCCTGGTTGCATACAA	LOC_Os06g20390
Os.5637.1.S1_at--719--991	1	Chr06:11715831..11715855 (25 bp)	TACTGGGTTGGCTACACAAATCTAG	LOC_Os06g20390
Os.5637.1.S1_at--449--1059	1	Chr06:11715876..11715900 (25 bp)	TTCTCCTGTACCTACAACCATTGAA	LOC_Os06g20390
Os.5637.1.S1_at--317--615	1	Chr06:11715990..11716014 (25 bp)	GAGGTGATCTGGTACTTCTTGTATA	LOC_Os06g20390
Os.5637.1.S1_at--680--103	1	NONE	AGGTCTCATTTGTCATTATTGCTAC	NONE

Target Sequence

AATACCACCCGAGTGCTGATACTACTACGCATCAAGTTACTCCCCCTGCTATCGCACCACCGGCTAGCCAATACAAGTAT
GATAGCAGTTACCAGCCAGAAGTTGAAAAGATTGCCGAGGCTCACAAGGCAGCAAGATTTGCAGTTGGTGCCCTCGCATT
TGACGACGTGTCGGTCGCTGTTGATCACCTGAAGCGCGCGCTGGATCTTCTGACGAACCCTTCCGCCGAAACTCATTAGT
TCTCTCAGGCTTTCTTATGGTCTTCGCAGAAAACATCTTCTGTACATATGCTACACTGGTAATTACTACGACATGGAGAT
GTTGCCTGGTTGCATACAAACAAAGATAGCAAAGATACTGGGTTGGCTACACAAATCTAGGAGATCTCGAGGGGCACCTT
TTCTCCTGTACCTACAACCATTGAACGGCTTCTTGTGTGAAGTTGAATTATTTGTCACAGAGTTTTGCAAGAAAAGGATA
TACTGTACATTACATTTGTTTGAATAAATCTTGAGAGGTGATCTGGTACTTCTTGTATATTGACTGCTTTGGTTTAAGGT
CTCATTTGTCATTATTGCTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis