Browse Element(s) Details

Os.6777.1.S1_at

Description

gb:AK071054.1
DB_XREF= gi:32981077
TID=Os.6777.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075N16, full insert sequence.
FL= gb:AK071054.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20340	10/11	Dual specificity phosphatase, catalytic domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20310	Os.49898.2.S1_at	11/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20310	Os.49898.1.S1_at	10/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20320	Os.5054.1.S1_at	11/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20320	Os.27772.1.S1_x_at	1/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20330	OsAffx.15514.1.S1_at	11/11	6	+	11681267..11682206	expressed protein
LOC_Os06g20340	Os.6777.1.S1_at	10/11	6	+	11683184..11686911	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009733	biological_process	response to auxin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0008138	molecular_function	protein tyrosine/serine/threonine phosphatase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6777.1.S1_at--264--599	1	Chr06:11683746..11683770 (25 bp)	GAGACATCCAGGTGCCTATCTTTAA	LOC_Os06g20340
Os.6777.1.S1_at--1152--55	1	Chr06:11683706..11683730 (25 bp)	ATCCATCTTTGAGCGTGTAAGCCCA	LOC_Os06g20340
Os.6777.1.S1_at--1095--329	1	Chr06:11683681..11683705 (25 bp)	CACAACATCCCTAGCAATTTCACAT	LOC_Os06g20340
Os.6777.1.S1_at--1136--899	1	Chr06:11683637..11683661 (25 bp)	TGAAGTGAAGCTCCCAGATAACAAT	LOC_Os06g20340
Os.6777.1.S1_at--604--813	1	Chr06:11683571..11683595 (25 bp)	GGACAGCTCCTAGTATGTTTTGCAT	LOC_Os06g20340
Os.6777.1.S1_at--885--793	1	Chr06:11683459..11683483 (25 bp)	GGATTTCAAGCGTTTTGACCATTGC	LOC_Os06g20340
Os.6777.1.S1_at--1071--583	1	Chr06:11683443..11683467 (25 bp)	GACCATTGCAGTTCTGCGTTTTAAC	LOC_Os06g20340
Os.6777.1.S1_at--887--731	1	Chr06:11683408..11683432 (25 bp)	GTGCTTTTTCATCGAACTTTTCAAG	LOC_Os06g20340
Os.6777.1.S1_at--1--721	1	Chr06:11683302..11683326 (25 bp)	GTCGTCAAGAATGCTGTAACACCCA	LOC_Os06g20340
Os.6777.1.S1_at--847--141	1	Chr06:11683278..11683302 (25 bp)	AGAAATATTACTCCCACGGCTGCAA	LOC_Os06g20340
Os.6777.1.S1_at--1143--359	1	Chr06:11683181..11683205 (25 bp)	CTTGAGTCCCTTGCTTACAGTGAAA	NONE

Target Sequence

GAGACATCCAGGTGCCTATCTTTAACCAGCAGGCNNNNNNATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGC
AATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGG
GGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCT
CGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGC
GTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTC
AAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACT
CCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATAT
ACTAGCTTGAGTCCCTTGCTTACAGTGAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis